PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g013010.2 | ||||||||
Common Name | MTR_5g013010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 208aa MW: 23593.2 Da PI: 6.5256 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.9e-18 | 135 | 187 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tk+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ Medtr5g013010.2 135 RKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRAR 187 788899**********************************************8 PP | |||||||
2 | HD-ZIP_I/II | 81.3 | 1.4e-26 | 135 | 188 | 1 | 54 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 +kk+rl+k+q+ +LEesF+e+++L+p++K +la++Lgl++rqv+vWFqnrRAR Medtr5g013010.2 135 RKKLRLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARL 188 69***************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 9.2E-33 | 4 | 109 | IPR006712 | HD-ZIP protein, N-terminal |
SuperFamily | SSF46689 | 2.82E-17 | 126 | 188 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 126 | 185 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.39 | 131 | 191 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-15 | 133 | 195 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.3E-16 | 135 | 187 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.50E-14 | 135 | 188 | No hit | No description |
PRINTS | PR00031 | 1.4E-5 | 162 | 171 | IPR000047 | Helix-turn-helix motif |
PRINTS | PR00031 | 1.4E-5 | 171 | 187 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0010016 | Biological Process | shoot system morphogenesis | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MSIEKEDFGL SLSLSFPQNP PNPQYLNLMS SSTHSYSPST FNPQKPSWND VFTSSDRDSE 60 TCRIEERPLI LRGIDVNRLP SGADCEEEAG VSSPNSTVSS VSGKRSEREV TGEDLDMERD 120 CSRGISDEED AETSRKKLRL TKDQSIILEE SFKEHNTLNP KQKLALAKQL GLRARQVEVW 180 FQNRRARLVH LTSRQYLKNR NTYSMHV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 139 | SRKKLRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.1519 | 0.0 | flower| leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g013010.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT052129 | 0.0 | BT052129.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-F-12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611347.1 | 1e-134 | homeobox-leucine zipper protein HAT4 | ||||
Swissprot | P46600 | 3e-57 | HAT1_ARATH; Homeobox-leucine zipper protein HAT1 | ||||
TrEMBL | A0A072UDF7 | 1e-151 | A0A072UDF7_MEDTR; Homeobox associated leucine zipper protein | ||||
STRING | AES94305 | 1e-134 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 5e-38 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g013010.2 |
Entrez Gene | 11438435 |
Publications ? help Back to Top | |||
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