PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g012080.1 | ||||||||
Common Name | MTR_5g012080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 350aa MW: 40487.1 Da PI: 6.7445 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.8 | 1.5e-55 | 7 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeelv++yL+kk+++k+++l ++ik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+t++r+nratk+g+Wkatg+dk+ Medtr5g012080.1 7 VPPGFRFHPTDEELVDHYLRKKIASKRIDL-DIIKDVDLYKIEPWDLQElcKIGSdEQTEWYFFSHKDKKYPTSSRTNRATKAGFWKATGRDKA 99 69****************************.99**************954555553455*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++s++ l+g++ktLvfykgrap+g+k+dW+mheyrle Medtr5g012080.1 100 IYSNHICLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137 ***99999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-60 | 4 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.937 | 7 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-28 | 8 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MNNFSHVPPG FRFHPTDEEL VDHYLRKKIA SKRIDLDIIK DVDLYKIEPW DLQELCKIGS 60 DEQTEWYFFS HKDKKYPTSS RTNRATKAGF WKATGRDKAI YSNHICLIGM RKTLVFYKGR 120 APNGQKSDWI MHEYRLETNE NGTTPQEEGW VVCKVFKKRI ATTMRKMDDS PCWYDDQVSF 180 MQSELESPSR ISSHHPYNAS YQHQQQHYPC KQELDQLQYN IHINNNDANN FLQLPQLENL 240 NSPMQCSLST HSMTQEQYGQ QQSMQMLYGG SNDLQAVVEQ SNEWKALDKF VASRLSQDQD 300 HASKGTSSYC NVAQQIALLS NDESKKSETG GQEHVTSISN SNCQIDTWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-50 | 6 | 159 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.24786 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. | |||||
Uniprot | TISSUE SPECIFICITY: Detected in root vessels of protoxylems, outermost metaxylems, inner metaxylems, shoots and hypocotyls. Expressed in roots, hypocotyls, cotyledons and leaves (PubMed:18445131). Expressed in developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g012080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR962129 | 0.0 | CR962129.2 Medicago truncatula chromosome 5 clone mth2-28m4, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611265.2 | 0.0 | NAC domain-containing protein 7 | ||||
Refseq | XP_024639296.1 | 0.0 | NAC domain-containing protein 7 | ||||
Swissprot | F4HYV5 | 1e-130 | NAC26_ARATH; NAC domain-containing protein 26 | ||||
TrEMBL | G7KG95 | 0.0 | G7KG95_MEDTR; Putative transcription factor NAM family | ||||
STRING | AES94223 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62700.1 | 1e-127 | Arabidopsis NAC domain containing protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g012080.1 |
Entrez Gene | 11435750 |
Publications ? help Back to Top | |||
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