PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g010680.3
Common NameMTR_5g010680
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 360aa    MW: 39641.5 Da    PI: 4.8821
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g010680.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.85.5e-36251152101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+++++l+sw+e+g+sf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll+
  Medtr5g010680.3  25 FLTKTYQLVDDSSVDDLVSWNEDGTSFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDGFRRGEKNLLR 109
                      9*****************************************************************99.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  Medtr5g010680.3 110 DIQRRK 115
                      ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3814108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.5E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1709.0E-4182207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MATLPVEQTG ESATAESQRS IPTPFLTKTY QLVDDSSVDD LVSWNEDGTS FIVWKPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDGF RRGEKNLLRD IQRRKILPAA  120
GTAMATAVAA ANTVTVAMAA PVRMVSPATS GDEQVVSSNS SPIAVNNGAT VQRSTSCTTA  180
PELVEENERL KKENMQLSNE LSQLKGLCNN ILAMMSNYNS GFSRQLESST SAATARGVVV  240
TEGKILDLLP LRNVSLAEEN VVVNLGGAAG GLPCETMSLM EPEVQASQVP KLFGVSIGLK  300
RCRTENEVEP EREEREQHQQ MQVQMQTQSS QETDRGSDVK SEPRDGDSDD QERRWKLMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-25411414129Heat shock factor protein 1
5d5v_B9e-25411414129Heat shock factor protein 1
5d5v_D9e-25411414129Heat shock factor protein 1
5hdg_A6e-252511410110Heat shock factor protein 1
5hdn_A6e-252511410110Heat shock factor protein 1
5hdn_B6e-252511410110Heat shock factor protein 1
5hdn_C6e-252511410110Heat shock factor protein 1
5hdn_D6e-252511410110Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.86630.0pod| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g010680.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0531950.0BT053195.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-M-13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611134.10.0heat stress transcription factor B-2b
RefseqXP_024640212.10.0heat stress transcription factor B-2b
RefseqXP_024640213.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-90HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLB7FM720.0B7FM72_MEDTR; Heat shock transcription factor B2A
STRINGAES940920.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-81HSF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]