PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g010680.3 | ||||||||
Common Name | MTR_5g010680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HSF | ||||||||
Protein Properties | Length: 360aa MW: 39641.5 Da PI: 4.8821 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.8 | 5.5e-36 | 25 | 115 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d+++++l+sw+e+g+sf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k+ll+ Medtr5g010680.3 25 FLTKTYQLVDDSSVDDLVSWNEDGTSFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDGFRRGEKNLLR 109 9*****************************************************************99.........***************** PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i+r+k Medtr5g010680.3 110 DIQRRK 115 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.1E-38 | 14 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.2E-59 | 21 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.58E-35 | 22 | 114 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.5E-32 | 25 | 114 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-20 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-20 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 64 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-20 | 76 | 88 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.20.5.170 | 9.0E-4 | 182 | 207 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MATLPVEQTG ESATAESQRS IPTPFLTKTY QLVDDSSVDD LVSWNEDGTS FIVWKPAEFA 60 RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDGF RRGEKNLLRD IQRRKILPAA 120 GTAMATAVAA ANTVTVAMAA PVRMVSPATS GDEQVVSSNS SPIAVNNGAT VQRSTSCTTA 180 PELVEENERL KKENMQLSNE LSQLKGLCNN ILAMMSNYNS GFSRQLESST SAATARGVVV 240 TEGKILDLLP LRNVSLAEEN VVVNLGGAAG GLPCETMSLM EPEVQASQVP KLFGVSIGLK 300 RCRTENEVEP EREEREQHQQ MQVQMQTQSS QETDRGSDVK SEPRDGDSDD QERRWKLMK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 9e-25 | 4 | 114 | 14 | 129 | Heat shock factor protein 1 |
5d5v_B | 9e-25 | 4 | 114 | 14 | 129 | Heat shock factor protein 1 |
5d5v_D | 9e-25 | 4 | 114 | 14 | 129 | Heat shock factor protein 1 |
5hdg_A | 6e-25 | 25 | 114 | 10 | 110 | Heat shock factor protein 1 |
5hdn_A | 6e-25 | 25 | 114 | 10 | 110 | Heat shock factor protein 1 |
5hdn_B | 6e-25 | 25 | 114 | 10 | 110 | Heat shock factor protein 1 |
5hdn_C | 6e-25 | 25 | 114 | 10 | 110 | Heat shock factor protein 1 |
5hdn_D | 6e-25 | 25 | 114 | 10 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.8663 | 0.0 | pod| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00432 | DAP | Transfer from AT4G11660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g010680.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT053195 | 0.0 | BT053195.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-M-13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611134.1 | 0.0 | heat stress transcription factor B-2b | ||||
Refseq | XP_024640212.1 | 0.0 | heat stress transcription factor B-2b | ||||
Refseq | XP_024640213.1 | 0.0 | heat stress transcription factor B-2b | ||||
Swissprot | Q9T0D3 | 1e-90 | HFB2B_ARATH; Heat stress transcription factor B-2b | ||||
TrEMBL | B7FM72 | 0.0 | B7FM72_MEDTR; Heat shock transcription factor B2A | ||||
STRING | AES94092 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 3e-81 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g010680.3 |
Entrez Gene | 11437512 |
Publications ? help Back to Top | |||
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