PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g131160.1 | ||||||||
Common Name | MTR_4g131160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 401aa MW: 42669.2 Da PI: 6.5082 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.2 | 5.3e-12 | 207 | 252 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Medtr4g131160.1 207 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 252 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.1E-17 | 200 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.79E-13 | 200 | 256 | No hit | No description |
PROSITE profile | PS50888 | 17.39 | 202 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-16 | 204 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-9 | 207 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-13 | 208 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MQSLNSLFNS SSSSSSEIPI PLQSQIQINN NNNNHNDTFN HHDDFLKQIL STNLPPSWNT 60 LDPNHNKPLL WDPNSDENVT FPNYDEQHNN LASKFRNHQI TDKTAAALML LTADSGGLLH 120 MPADFDSSQN DVVNTSSAAG DASVQALFNG FSGSLHGVAQ PHHFQPPQGQ SFGSGSVSAT 180 NQAPASGAPA QPRQKVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP NANKTDKASM 240 LDEIIDYVKF LQVQVKVLSM SRLGGAGAVA PLVADMSSEG VSDCVQTNGN GGVHPRNPKT 300 ASSSNESLTM TEHQVAKLME EDMGSAMQYL QGKGLCLMPI SLATAISTAT CHTRNPLINA 360 ANNNINGSSN PITASNGDGP SSPGMSVNSI VKDANSASKS * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 211 | 216 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.9362 | 0.0 | root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g131160.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC151727 | 0.0 | AC151727.27 Medicago truncatula chromosome 8 clone mth2-25p23, complete sequence. | |||
GenBank | AC169120 | 0.0 | AC169120.12 Medicago truncatula chromosome 8 clone mth2-84o2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003610348.2 | 0.0 | transcription factor bHLH82 isoform X2 | ||||
Swissprot | Q9ZUG9 | 1e-89 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | G7JGS7 | 0.0 | G7JGS7_MEDTR; BHLH transcription factor | ||||
STRING | AES92544 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 6e-69 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g131160.1 |
Entrez Gene | 11441077 |
Publications ? help Back to Top | |||
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