PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g123470.1 | ||||||||
Common Name | MTR_4g123470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 226aa MW: 25859.9 Da PI: 8.5415 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.6 | 2.8e-10 | 161 | 220 | 35 | 93 |
EEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 35 tltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++l + + v+l+y+ + +++++GW +F+ ang++ gD+++Fk + +++++v Medtr4g123470.1 161 YVMLCGPYDNIIPVRLKYTDDPVPnVMFGRGWTSFCAANGIDGGDVLIFKCKCVMDKKYV 220 57777788888889997755555469************************8877666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.55E-9 | 16 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-8 | 16 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0046 | 130 | 225 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.1E-11 | 143 | 211 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-9 | 145 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MCFRVKFPSN FTTKVKCSFF TVHVQRQDVG ELPPFFVAQY FYELPEQWHL LDGDGNTHSV 60 MFNKSVSRPL LTDGWSALRL FYEFSGSKII AFQYLGGSRF QIFVFAHNIT PVDYPPYHSM 120 SEAPSCYCTF EIPIAGYRST KSPKELPDTF GKFLRVKHHD YVMLCGPYDN IIPVRLKYTD 180 DPVPNVMFGR GWTSFCAANG IDGGDVLIFK CKCVMDKKYV IISKR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g123470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC154391 | 1e-44 | AC154391.1 Medicago truncatula chromosome 7 clone mth2-143d17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024637264.1 | 1e-120 | uncharacterized protein LOC11421867 | ||||
TrEMBL | G7JQ00 | 1e-168 | G7JQ00_MEDTR; Uncharacterized protein | ||||
STRING | AES92029 | 1e-169 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14902 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g123470.1 |
Entrez Gene | 11421867 |
Publications ? help Back to Top | |||
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