PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g122530.1
Common NameMTR_4g122530
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 421aa    MW: 46043.9 Da    PI: 5.7569
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g122530.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-31207264158
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      ldDgy+WrKYGqK+vk+s+fprsYYrCt  +C+vkk++ersa d ++v + Yeg+H h
  Medtr4g122530.1 207 LDDGYRWRKYGQKPVKNSPFPRSYYRCTAGNCEVKKRIERSAADSSIVLTSYEGHHIH 264
                      59******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-31194266IPR003657WRKY domain
SuperFamilySSF1182902.88E-26200265IPR003657WRKY domain
PROSITE profilePS5081129.838202267IPR003657WRKY domain
SMARTSM007742.0E-35207266IPR003657WRKY domain
PfamPF031067.1E-24208264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MKKNMANSST TAFSGEIPNK KNKGSCVINF PFSPALPSCS IFDMIPPSQS DDQQSSSFAG  60
YIDLLSTNDF TSSSATLFDW FPTIDTDMSA PPSTTQLPPL PAPSPAASEV LNNPATPVSV  120
SSSISSSSNA AGVADKVMVE ENEHEHEEEL EGDEAEEKDE DHGIRLVENQ NDQDQMKKQL  180
KPKKKNKNKK LRPARVTFKT KSDVDHLDDG YRWRKYGQKP VKNSPFPRSY YRCTAGNCEV  240
KKRIERSAAD SSIVLTSYEG HHIHLSPVLL RAANLGIMSD PSGFQEQVHQ HHNTTSGVVG  300
SSVLGNEFAM SQSQQYQKFQ DQNQNVLHHQ RQAVPSLLYN SDYNNSFNIS PLSNIVNSAD  360
NLMISSTSFG GFLQNQENYG GGNSSLSSSM MTSTNDMVRN NGLLQDMIAP MEMGGAGAKE  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-23199267977Probable WRKY transcription factor 4
2lex_A4e-23199267977Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g122530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351000.0AC135100.12 Medicago truncatula chromosome 8 clone mth2-17j9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609797.20.0probable WRKY transcription factor 23
TrEMBLG7JNY70.0G7JNY7_MEDTR; Putative transcription factor WRKY family
STRINGAES919940.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2119334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.16e-37WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]