PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g119990.1 | ||||||||
Common Name | MTR_4g119990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 378aa MW: 43777.3 Da PI: 9.8178 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.6 | 1.6e-16 | 216 | 311 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 ff ++++ + k++ l +p +fa++h + e++ +tl + r W+ l+ + + ++y+l++GW++F n+Lk gD++vF+l++ + ++ Medtr4g119990.1 216 FFMCMIQKTYIKKDVLGIPIEFAKKHLHR-MEGRNITLFVDQDRPWNADLNLTLN-NQYTLSGGWSKFRAHNNLKFGDICVFMLNKCkGTVSFQ 307 788899999*****************444.456689999999********65444.469************************98644555666 PP EEEE CS B3 94 vkvf 97 vk+f Medtr4g119990.1 308 VKIF 311 7666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-13 | 11 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-14 | 11 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.78E-8 | 14 | 105 | No hit | No description |
PROSITE profile | PS50863 | 8.388 | 14 | 108 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.6E-4 | 15 | 108 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-18 | 212 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.9E-17 | 213 | 312 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.761 | 216 | 314 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.82E-14 | 216 | 312 | No hit | No description |
SMART | SM01019 | 3.3E-12 | 216 | 314 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-13 | 216 | 311 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MSSTELDHRS NGVHFFKIIL QRNLNEGKLK VPVSFVRRHW LGITNPVTLR LPNMTENKVF 60 WEKTSDYNVW FCNGWKEFAK YLSLGDSQLT LFQYQENSVF NVIVCGKCGL EIKYPLKETN 120 KEHEEVEESD TSLQIIEDPS SSKGKRLKSS PPYFKKMKIN SKEQKEPKHE KRKVQEQGRF 180 LNFKDTDNGS SCDDLKERSK VLYDKVKNFF HADMDFFMCM IQKTYIKKDV LGIPIEFAKK 240 HLHRMEGRNI TLFVDQDRPW NADLNLTLNN QYTLSGGWSK FRAHNNLKFG DICVFMLNKC 300 KGTVSFQVKI FSLEKDMSTP YFEVAWYLLG AEPTPASLGT SPGSAPTFFI TSLGGWHRTT 360 LQRRKKIDWG GKCLGRK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g119990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636868.1 | 0.0 | B3 domain-containing protein REM8 | ||||
TrEMBL | G7JLI4 | 0.0 | G7JLI4_MEDTR; B3 DNA-binding domain protein | ||||
STRING | AES91879 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14023 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 4e-15 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g119990.1 |
Entrez Gene | 11418291 |
Publications ? help Back to Top | |||
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