PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g119990.1
Common NameMTR_4g119990
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 378aa    MW: 43777.3 Da    PI: 9.8178
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g119990.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.6e-16216311197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                      ff  ++++ + k++ l +p +fa++h +   e++ +tl   + r W+  l+ + + ++y+l++GW++F   n+Lk gD++vF+l++   + ++ 
  Medtr4g119990.1 216 FFMCMIQKTYIKKDVLGIPIEFAKKHLHR-MEGRNITLFVDQDRPWNADLNLTLN-NQYTLSGGWSKFRAHNNLKFGDICVFMLNKCkGTVSFQ 307
                      788899999*****************444.456689999999********65444.469************************98644555666 PP

                      EEEE CS
               B3  94 vkvf 97 
                      vk+f
  Medtr4g119990.1 308 VKIF 311
                      7666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-1311106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-1411106IPR015300DNA-binding pseudobarrel domain
CDDcd100179.78E-814105No hitNo description
PROSITE profilePS508638.38814108IPR003340B3 DNA binding domain
SMARTSM010197.6E-415108IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-18212312IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-17213312IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.761216314IPR003340B3 DNA binding domain
CDDcd100173.82E-14216312No hitNo description
SMARTSM010193.3E-12216314IPR003340B3 DNA binding domain
PfamPF023621.1E-13216311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MSSTELDHRS NGVHFFKIIL QRNLNEGKLK VPVSFVRRHW LGITNPVTLR LPNMTENKVF  60
WEKTSDYNVW FCNGWKEFAK YLSLGDSQLT LFQYQENSVF NVIVCGKCGL EIKYPLKETN  120
KEHEEVEESD TSLQIIEDPS SSKGKRLKSS PPYFKKMKIN SKEQKEPKHE KRKVQEQGRF  180
LNFKDTDNGS SCDDLKERSK VLYDKVKNFF HADMDFFMCM IQKTYIKKDV LGIPIEFAKK  240
HLHRMEGRNI TLFVDQDRPW NADLNLTLNN QYTLSGGWSK FRAHNNLKFG DICVFMLNKC  300
KGTVSFQVKI FSLEKDMSTP YFEVAWYLLG AEPTPASLGT SPGSAPTFFI TSLGGWHRTT  360
LQRRKKIDWG GKCLGRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g119990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636868.10.0B3 domain-containing protein REM8
TrEMBLG7JLI40.0G7JLI4_MEDTR; B3 DNA-binding domain protein
STRINGAES918790.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.14e-15B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]