PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g113890.1
Common NameMTR_4g113890
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 232aa    MW: 25861.6 Da    PI: 8.3672
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g113890.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.1e-076488126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt++C  f   G C+ G +C+FaHg
  Medtr4g113890.1 64 YKTRICTKFIF-GACRNGTNCNFAHG 88
                     9*******988.*************8 PP
2zf-CCCH21.73.6e-07115138225
                      -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                      k++lC+ +  +  C+yGd+CkF H
  Medtr4g113890.1 115 KMKLCKKYCNGEKCPYGDKCKFLH 138
                      7899******66************ PP
3zf-CCCH344.9e-11150175227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+lC  +  tG+C++G +C+FaHg+
  Medtr4g113890.1 150 KTKLCLKWKDTGYCSFGKNCHFAHGE 175
                      9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.3E-146096IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-86094IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2396390IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-56389IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.953113141IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4113140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-7114140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-8115139IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-5115138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-15146180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169148176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.24E-10148179IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5148175IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8150175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAFPDDIPTS KITPPQFASL NNDDFKREGT SHSNALICPP SDALICPPPR MTLPQSNRSD  60
HIFYKTRICT KFIFGACRNG TNCNFAHGAE EIRQPPPNSQ KLVGPCNEDK KIINKMKLCK  120
KYCNGEKCPY GDKCKFLHED PAQFRGTYRK TKLCLKWKDT GYCSFGKNCH FAHGEEELQV  180
PGGAIEAEAA VAIEADAAIT IAKEEEQAKK KRILGLKFSQ INRIYGDWID G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g113890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1520670.0AC152067.21 Medicago truncatula chromosome 8 clone mth2-22g24, complete sequence.
GenBankAC1579830.0AC157983.16 Medicago truncatula chromosome 8 clone mth2-130n5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609272.11e-173zinc finger CCCH domain-containing protein 39
SwissprotQ9LT813e-45C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLG7JVB31e-172G7JVB3_MEDTR; Putative transcription factor C3H family
STRINGAES914691e-172(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-32C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]