PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g111975.1
Common NameMTR_4g111975
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 304aa    MW: 33375.1 Da    PI: 8.0646
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g111975.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.5e-10856447
                     S-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqky 47
                     W+ eE++ + +a++++  +      +W++Ia+ ++ +++ +q+k ++q +
  Medtr4g111975.1  8 WSYEEEKAFENAIAMHWIEkedskeQWEKIASSVP-NKSMEQVKQHYQVL 56
                     ****************9999***************.************86 PP
2Myb_DNA-binding38.92e-12139183347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  Medtr4g111975.1 139 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 183
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.162358IPR017884SANT domain
SMARTSM007171.9E-5459IPR001005SANT/Myb domain
SuperFamilySSF466894.64E-9761IPR009057Homeodomain-like
PfamPF002491.2E-7856IPR001005SANT/Myb domain
CDDcd001672.35E-8857No hitNo description
Gene3DG3DSA:1.10.10.601.7E-5857IPR009057Homeodomain-like
PROSITE profilePS5129416.873132188IPR017930Myb domain
SuperFamilySSF466897.18E-17134189IPR009057Homeodomain-like
SMARTSM007172.3E-10136186IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.2E-17136186IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.5E-11137182IPR009057Homeodomain-like
CDDcd001671.03E-9139184No hitNo description
PfamPF002497.5E-11139183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSSSGAIWSY EEEKAFENAI AMHWIEKEDS KEQWEKIASS VPNKSMEQVK QHYQVLVDDV  60
SAIEEGHVSL PNYANELETI NSSNKDSSKA TTSSDKRSSC NFGSGFSGLG HDSTHHSSGK  120
GGLSRSSSSS EQERRKGIPW TEEEHRLFLL GLDKFGKGDW RSISRNFVIS RTPTQVASHA  180
QKYFIRLNSM NRDRRRSSIH DITSVNNGDV ASNHQAPITG QHGNTLPSNT MGLGQSMKHR  240
VQPHHPPGGL GMYGAPVGHP FVAPPAHMAS AVGTPVMLPH HPHHHPPYVV PLAYPMAPPT  300
MHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-12473773RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.212730.0leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g111975.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1472261e-152BT147226.1 Medicago truncatula clone JCVI-FLMt-14K20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458057.10.0transcription factor MYBS1
SwissprotQ9FNN66e-81SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A072USM00.0A0A072USM0_MEDTR; MYB-like transcription factor family protein
STRINGGLYMA17G13010.11e-174(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-77MYB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]