PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g109510.1
Common NameMTR_4g109510
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 641aa    MW: 73531.5 Da    PI: 4.6629
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g109510.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014295316122
                      EEETTTTEEESSHHHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                      + C  Cgk F++  + k+H ++
  Medtr4g109510.1 295 FYCVLCGKKFKSEKQWKNHEQS 316
                      78*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1103.9E-24476IPR001623DnaJ domain
SuperFamilySSF465651.83E-235104IPR001623DnaJ domain
SMARTSM002717.9E-23769IPR001623DnaJ domain
PROSITE profilePS5007619.657877IPR001623DnaJ domain
CDDcd062571.80E-17866IPR001623DnaJ domain
PfamPF002264.1E-21974IPR001623DnaJ domain
PRINTSPR006251.4E-141028IPR001623DnaJ domain
PRINTSPR006251.4E-142843IPR001623DnaJ domain
PRINTSPR006251.4E-144969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576672.38E-14285338No hitNo description
SMARTSM004517.7E-6292326IPR003604Zinc finger, U1-type
PROSITE profilePS501579.182295324IPR007087Zinc finger, C2H2
PfamPF121719.2E-11295320IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.27295319IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280297319IPR007087Zinc finger, C2H2
SMARTSM003555.7610634IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245610639IPR007087Zinc finger, C2H2
PROSITE patternPS000280612634IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MASTAKRCHY EVLGLPRECS PEELRSAYRK LALQRHPDKL VKSGLSQSEA TAQFQELQHA  60
YEVLSDPKER AWYDSHRSQI LFSDPNSKSN SVVPDLFSFF SNTVYSGFSD SGKGFYKVYS  120
DVFDKIQANE INFAKKLGLG IDSVRQAPLM GNLDSPYAQV TAFYSYWLGF STVMDFCWAD  180
EYDAMAGPNR KSRRLMEEEN NKVRRKAKRE YNDTVRKLAD FVKKRDKRVI DMKVKKNLEM  240
EKKKEEEKER KRKLEMERKE RAMAYEEPDW AKVDEEEVED LYEDDESEKK DEKEFYCVLC  300
GKKFKSEKQW KNHEQSKKHK EKVAEFKDSL DDEEELEAEV DEEGESEREG VDEERLESEE  360
DGVRVDDLEE RIRDSLNVAD EESANGVELN DDGDDDEFFD AEHAKDGEET GASVDFVVND  420
DDDDENDVLE TMVSGHKGRF DFDENDGNDD DVDDDEIGVL EAMLAGRKSR KPSASTHKPE  480
VSETPTQIES ENENDGVGAM EYNNRKPAKK KRRAKKEKGG KNGDETNVPT NGKYEKNVIN  540
IGDGDSYAQE SSSQYFEENE DNAGKENEQV GRDKKKISNQ PVDKKGTSKN TKPRSKLSTR  600
GRKPNRNLGH FCETCEEEFE SRNKLHKHLS DSGHAAMKSR *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1508512KKKRR
2508515KKKRRAKK
3509514KKRRAK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.267020.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g109510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1461100.0BT146110.1 Medicago truncatula clone JCVI-FLMt-9A19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457987.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A072USH10.0A0A072USH1_MEDTR; DnaJ heat shock family protein, putative
STRINGXP_004508679.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-150DNAJ heat shock N-terminal domain-containing protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]