PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g107650.1
Common NameMTR_4g107650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 338aa    MW: 38938.6 Da    PI: 4.4933
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g107650.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-1995148356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ +q++ Le+ Fe+++++  e++++LAk lgL+ rqV +WFqNrRa++k
  Medtr4g107650.1  95 KKRRLSVDQVQFLEKSFEEDNKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWK 148
                      566899***********************************************9 PP
2HD-ZIP_I/II129.41.5e-4194186193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrls +qv++LE+sFee++kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L + y++lk+e ++L ke+++L++e+++
  Medtr4g107650.1  94 EKKRRLSVDQVQFLEKSFEEDNKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDSLNDGYESLKTEYDNLLKEKDRLQSEVAS 186
                      69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.71890150IPR001356Homeobox domain
SMARTSM003897.7E-2093154IPR001356Homeobox domain
SuperFamilySSF466895.13E-1994162IPR009057Homeodomain-like
CDDcd000865.83E-1795151No hitNo description
PfamPF000469.3E-1795148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-2097158IPR009057Homeodomain-like
PRINTSPR000311.4E-5121130IPR000047Helix-turn-helix motif
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PRINTSPR000311.4E-5130146IPR000047Helix-turn-helix motif
PfamPF021831.4E-15150191IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAGGRVFSNG PANISNINMN ILLQNQQQTP RGNSSQQPLD SLFLSSSASF FGSRSMVSFE  60
DVQGRKRRNR SFFGGFDLDE NGEDEMDEYF HQSEKKRRLS VDQVQFLEKS FEEDNKLEPE  120
RKTKLAKDLG LQPRQVAIWF QNRRARWKTK QLEKDYDSLN DGYESLKTEY DNLLKEKDRL  180
QSEVASLTEK VLEREKQEGK FKQGESETKE FLKEPTINKP LVDSVSEGEG SKLSIVEASN  240
NNNNNNKLED ISSARSDILD CESPRYTDGV LETCDSSYVF EPEYQSDLSQ DEEDHNLLPP  300
YIFTKLEDVN YSDPPHNSTS YGFQEEDHHQ ALWPWSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.60330.0leaf| root| seed| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g107650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0524400.0BT052440.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-B-9 unknown mRNA.
GenBankBT1381880.0BT138188.1 Medicago truncatula clone JCVI-FLMt-17O5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608986.10.0homeobox-leucine zipper protein HAT5
TrEMBLB7FK220.0B7FK22_MEDTR; Homeobox leucine zipper family protein
STRINGAES911830.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-43homeobox 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]