PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g107320.1 | ||||||||
Common Name | MTR_4g107320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 142aa MW: 16234.5 Da PI: 6.6819 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.2 | 4e-05 | 60 | 100 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L +l+P ++ K +L + ++YI+sLq Medtr4g107320.1 60 RREKISERIKMLEDLVPRY---TKLVIGKTLMLYEIINYIQSLQ 100 ******************9...777799999************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.842 | 48 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.82E-4 | 60 | 104 | No hit | No description |
SuperFamily | SSF47459 | 5.76E-9 | 60 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.6E-8 | 60 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MDEEKMKEEE KVSTATLAYP YSQMGSGSKT KESLNFEGES TSFFLTGGYT KSPPNGRGER 60 REKISERIKM LEDLVPRYTK LVIGKTLMLY EIINYIQSLQ HQVEIHAYVF SIFLHERINF 120 ILNMHSSIDC FPSKDHASLS N* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g107320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020978913.1 | 2e-19 | transcription factor bHLH79 isoform X2 | ||||
Refseq | XP_020997815.1 | 2e-19 | transcription factor bHLH79 isoform X3 | ||||
Refseq | XP_025603162.1 | 2e-19 | transcription factor bHLH79 isoform X3 | ||||
Refseq | XP_025629224.1 | 2e-19 | transcription factor bHLH79 isoform X2 | ||||
Swissprot | Q9SRT2 | 2e-15 | BH062_ARATH; Transcription factor bHLH62 | ||||
TrEMBL | A0A072US61 | 1e-100 | A0A072US61_MEDTR; Basic helix loop helix (BHLH) DNA-binding superfamily protein, putative | ||||
STRING | AES78613 | 1e-101 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 9e-18 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g107320.1 |
Entrez Gene | 25493788 |
Publications ? help Back to Top | |||
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