PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g102790.1
Common NameMTR_4g102790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 678aa    MW: 75349.1 Da    PI: 5.6358
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g102790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.12e-1252906622374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkf 93 
                       +lL+ c++a+ s++ +++++++a+l +lasp+g+++ R+ ayfteALa r++r +++++++ ++s++ ++    +e+++al+l+++v+Pi+kf
  Medtr4g102790.1 290 LSLLTGCVDAIGSRNVAAVNHFIAKLGDLASPRGTSISRICAYFTEALAIRVTRLWPHVFQISATSRDFDRVvdDDETVTALRLLNQVTPIPKF 383
                      689*********************************************************998777766555457888999999********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       h+t N+++l+a+eg+ervH+iDfdi+qGlQWp+++q+LasR+++p ++RiTgvg+    sk+el+etg+rLa fAe+l++pf+f++ v++rle
  Medtr4g102790.1 384 LHFTSNEMLLRAFEGKERVHVIDFDIKQGLQWPSFFQSLASRTNPPSHVRITGVGE----SKQELNETGDRLAGFAEALNLPFDFHP-VVDRLE 472
                      ********************************************************....***************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklprese 280
                      d++l++L+vk++E++aVn+vlqlh++l++ +s     +++L l++s++P++vv++eqea+hn++++  r++++l+yysalfds+ +++lp es 
  Medtr4g102790.1 473 DVRLWMLHVKEHETVAVNCVLQLHKTLHD-GSGGA-LRDFLGLIRSTNPTIVVMAEQEAEHNEARLDSRVCNSLKYYSALFDSIdHSGLPLESP 564
                      ***************************44.44444.689*********************************************9999****** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvs 369
                       rik+E++ l+rei+n+vaceg++r erh+++++Wr+++ e  GF+ + +++++  q + ll++++ d y+v+++      +l+lgW d+pL++
  Medtr4g102790.1 565 MRIKIEEM-LAREIRNIVACEGRDRLERHQSFGNWRKMIVEhGGFRCMGVTDRELIQSQFLLKMYSCDNYSVQKQeqegATALTLGWLDQPLYT 657
                      ********.*****************************976489**********************999***955444456678********** PP

             GRAS 370 vSaWr 374
                      vS+W+
  Medtr4g102790.1 658 VSSWT 662
                      ****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.024263638IPR005202Transcription factor GRAS
PfamPF035147.0E-123290662IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MLAGCSSSTL LSPTHRLRSE ASAQFQACHF QLPSMSTQRL DLPCSFPRKD GSSRSQQPLR  60
PVGISVEKPE VKNNSSSTCS LQQNIRLPPL ATTAQSLGEI KDEEFWEKGG RSLKRLAEHG  120
SLDESFANRA KRKKGNGGDE NFDEFERESF SLAQFGAGNF WSVHSFGGFN SPSLPFSLNC  180
SGDEERVCFA PAEVISAPLP LSNNPWLESA VTKITNFGEG SHQHQHHHHV NEGSVSNGSS  240
ESQSLSLRLN ENASEHEEGN GSGNPYQHEG TEVETGEEDE EEEHRGFELL SLLTGCVDAI  300
GSRNVAAVNH FIAKLGDLAS PRGTSISRIC AYFTEALAIR VTRLWPHVFQ ISATSRDFDR  360
VVDDDETVTA LRLLNQVTPI PKFLHFTSNE MLLRAFEGKE RVHVIDFDIK QGLQWPSFFQ  420
SLASRTNPPS HVRITGVGES KQELNETGDR LAGFAEALNL PFDFHPVVDR LEDVRLWMLH  480
VKEHETVAVN CVLQLHKTLH DGSGGALRDF LGLIRSTNPT IVVMAEQEAE HNEARLDSRV  540
CNSLKYYSAL FDSIDHSGLP LESPMRIKIE EMLAREIRNI VACEGRDRLE RHQSFGNWRK  600
MIVEHGGFRC MGVTDRELIQ SQFLLKMYSC DNYSVQKQEQ EGATALTLGW LDQPLYTVSS  660
WTPIDVAGSS SSFSQPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-652726635379Protein SCARECROW
5b3h_D1e-652726635379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.252240.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g102790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2035578e-64AC203557.17 Medicago truncatula clone mth2-68e20, complete sequence.
GenBankCU4590338e-64CU459033.2 Medicago truncatula chromosome 5 clone mth4-37h20, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638226.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A072URL30.0A0A072URL3_MEDTR; GRAS family transcription factor
STRINGXP_004515801.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]