PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g097940.1
Common NameMTR_4g097940
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 329aa    MW: 37233.1 Da    PI: 8.4217
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g097940.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13154201355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r h ++Er+RR+++ ++f  L ++lP +     kK++Ka+iLe A++++k+Lq
  Medtr4g097940.1 154 RDHVIAERKRREKLSQRFIALSSILPGL-----KKMDKATILEDAIKHMKQLQ 201
                      5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.942151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-11155201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-17155214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-16156218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-12156205No hitNo description
SMARTSM003536.1E-15157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MIQISSTNYM PEFGLMEDTT LFSDHEYQMD SYAFQFDDMA YFKSFSESPQ ESTYSSHTNI  60
NNKRIHSEST QNSSFPTQSP DQSVASATPP TKLLKASPKI ISFDYSNNDS KVKKPKTEIG  120
YGENLNFGSV ISQGDYYKRE NKVSAVNRNP MQARDHVIAE RKRREKLSQR FIALSSILPG  180
LKKMDKATIL EDAIKHMKQL QERVKTLEEQ VADKKVESAV FVKRSILFDN NDSSSCDENS  240
DQSLPKIEAR VSGKDMLIRI HGDKHCGRSA AAILNLLEKH HLTVQSSSIL PFGNNYVDIT  300
IVAQMNKEYC LTIKDLVRSI NQVLRQLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164ERKRRE
2160165RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.242340.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g097940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1418620.0AC141862.54 Medicago truncatula chromosome 8 clone mth2-33n1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608592.10.0transcription factor bHLH19
TrEMBLG7JGD60.0G7JGD6_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES907890.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.16e-52bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]