PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g097600.1
Common NameMTR_4g097600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 272aa    MW: 30274.9 Da    PI: 7.8208
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g097600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.5e-20126180256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tk+q   Lee F+++++++ ++++ LA++l+Lt rqV vWFqNrRa+ k
  Medtr4g097600.1 126 RKKLRLTKDQSAMLEESFKEHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTK 180
                      788899***********************************************98 PP
2HD-ZIP_I/II128.23.4e-41126215191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rl+k+q+++LEesF+e+++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+kev+eL+ +l
  Medtr4g097600.1 126 RKKLRLTKDQSAMLEESFKEHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLQKEVQELK-AL 215
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.52E-19120183IPR009057Homeodomain-like
PROSITE profilePS5007117.783122182IPR001356Homeobox domain
SMARTSM003891.6E-17124186IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-19126180IPR009057Homeodomain-like
PfamPF000463.1E-17126180IPR001356Homeobox domain
CDDcd000867.86E-17126183No hitNo description
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PfamPF021831.0E-10182216IPR003106Leucine zipper, homeobox-associated
SMARTSM003409.0E-25182225IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGLNNQDASN NSGLQLILGL ALTLTKQDTP PSNNNVTKPY SSSNHNNYEA EPSLTLGLST  60
KSYYEEPLDF STQTNSPHHS VVSSFSSGRV KRERDVSSEL EMETTEMERV SSRISDEDED  120
GATAARKKLR LTKDQSAMLE ESFKEHSTLN PKQKQALARE LNLTPRQVEV WFQNRRARTK  180
LKQTEVDCEF LKKCCETLTE ENRRLQKEVQ ELKALKLVKP LYMPMPAATL TMCPSCERLG  240
GGGGVNGGSS NKTNFSKPHF YNPFTNSSAA C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.91490.0leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g097600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457515.10.0homeobox-leucine zipper protein HAT22
SwissprotP466041e-88HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A072UQB30.0A0A072UQB3_MEDTR; Homeobox associated leucine zipper protein
STRINGXP_004509044.11e-138(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-86HD-ZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]