PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g094302.1
Common NameMTR_4g094302
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 192aa    MW: 22243.6 Da    PI: 4.584
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g094302.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.92.3e-37111301128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++Pw+L+ ++ +e ++wy++s+r         +nr+t++gyW   g +++v++
  Medtr4g094302.1  11 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRT--------QNRMTNNGYWMPMGMEEQVVT 95 
                      79*************************999.99***************77778899******984........589************999998 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ vg+kk  vf+ g+ap+g++t+W+m+eyrl
  Medtr4g094302.1  96 SsSNKRVGMKKYYVFHIGEAPNGNQTNWIMQEYRL 130
                      757788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-487158IPR003441NAC domain
PROSITE profilePS5100545.88311159IPR003441NAC domain
PfamPF023651.9E-2212130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVDNNNNNVN LPPGFRFYPT DEELVVHFLH RKASLLPCHP DVIPDLDLYP FDPWQLQGRA  60
LEEGNQWYYY SRRTQNRMTN NGYWMPMGME EQVVTSSSNK RVGMKKYYVF HIGEAPNGNQ  120
TNWIMQEYRL SDSASSSTRS SSKRKSQPKS WVICRVYERD EDDQDGDGTE LSCLDEVFLS  180
LDDLDEVSLP N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-41716413170NO APICAL MERISTEM PROTEIN
1ut4_B4e-41716413170NO APICAL MERISTEM PROTEIN
1ut7_A4e-41716413170NO APICAL MERISTEM PROTEIN
1ut7_B4e-41716413170NO APICAL MERISTEM PROTEIN
3swm_A4e-41716416173NAC domain-containing protein 19
3swm_B4e-41716416173NAC domain-containing protein 19
3swm_C4e-41716416173NAC domain-containing protein 19
3swm_D4e-41716416173NAC domain-containing protein 19
3swp_A4e-41716416173NAC domain-containing protein 19
3swp_B4e-41716416173NAC domain-containing protein 19
3swp_C4e-41716416173NAC domain-containing protein 19
3swp_D4e-41716416173NAC domain-containing protein 19
4dul_A4e-41716413170NAC domain-containing protein 19
4dul_B4e-41716413170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.149000.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g094302.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457220.11e-142NAC domain-containing protein 104
SwissprotQ8GWK69e-84NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A072UPE91e-141A0A072UPE9_MEDTR; NAC transcription factor-like protein
STRINGGLYMA08G08010.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.15e-80xylem NAC domain 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  3. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]