PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g094302.1 | ||||||||
Common Name | MTR_4g094302 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 22243.6 Da PI: 4.584 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 119.9 | 2.3e-37 | 11 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++Pw+L+ ++ +e ++wy++s+r +nr+t++gyW g +++v++ Medtr4g094302.1 11 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRT--------QNRMTNNGYWMPMGMEEQVVT 95 79*************************999.99***************77778899******984........589************999998 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ vg+kk vf+ g+ap+g++t+W+m+eyrl Medtr4g094302.1 96 SsSNKRVGMKKYYVFHIGEAPNGNQTNWIMQEYRL 130 757788***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-48 | 7 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.883 | 11 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-22 | 12 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MVDNNNNNVN LPPGFRFYPT DEELVVHFLH RKASLLPCHP DVIPDLDLYP FDPWQLQGRA 60 LEEGNQWYYY SRRTQNRMTN NGYWMPMGME EQVVTSSSNK RVGMKKYYVF HIGEAPNGNQ 120 TNWIMQEYRL SDSASSSTRS SSKRKSQPKS WVICRVYERD EDDQDGDGTE LSCLDEVFLS 180 LDDLDEVSLP N* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-41 | 7 | 164 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-41 | 7 | 164 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-41 | 7 | 164 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-41 | 7 | 164 | 13 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-41 | 7 | 164 | 16 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-41 | 7 | 164 | 16 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-41 | 7 | 164 | 16 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-41 | 7 | 164 | 16 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-41 | 7 | 164 | 16 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-41 | 7 | 164 | 16 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-41 | 7 | 164 | 16 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-41 | 7 | 164 | 16 | 173 | NAC domain-containing protein 19 |
4dul_A | 4e-41 | 7 | 164 | 13 | 170 | NAC domain-containing protein 19 |
4dul_B | 4e-41 | 7 | 164 | 13 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.14900 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g094302.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013457220.1 | 1e-142 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 9e-84 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A072UPE9 | 1e-141 | A0A072UPE9_MEDTR; NAC transcription factor-like protein | ||||
STRING | GLYMA08G08010.1 | 1e-108 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64530.1 | 5e-80 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g094302.1 |
Entrez Gene | 25493296 |
Publications ? help Back to Top | |||
---|---|---|---|
|