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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g091990.1 | ||||||||
Common Name | MTR_4g091990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 200aa MW: 23150 Da PI: 10.0401 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21 | 6e-07 | 49 | 90 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er+R +r+N++++ L +l+P + ++K +i A+ YIk+L Medtr4g091990.1 49 SERKRKQRLNTKLFMLWSLVPMV-----TNMTKESIFNDAITYIKKL 90 5*********************8.....68***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.426 | 41 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-12 | 46 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.6E-6 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.12E-6 | 49 | 95 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-11 | 49 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-4 | 49 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEQEHDIRLS LSLEDLGFNA ENDSNKRKSS KKYYNEDGTK VFLSKNAGSE RKRKQRLNTK 60 LFMLWSLVPM VTNMTKESIF NDAITYIKKL KDEVKSLTQE LQAMEPKEKF KERAEPKIEV 120 QVEKMDGNKL WVKMIFENKR GGFKKLMETM NDLGLEMIEA NVTTIKGAYL ITTFIKGMGG 180 QRLDVHQVKH LLQDIIKII* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g091990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636481.1 | 1e-141 | transcription factor DYT1 | ||||
TrEMBL | A0A072UQ30 | 1e-142 | A0A072UQ30_MEDTR; Helix loop helix DNA-binding domain protein | ||||
STRING | XP_004504967.1 | 2e-60 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5510 | 29 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 2e-30 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g091990.1 |
Entrez Gene | 25493245 |
Publications ? help Back to Top | |||
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