PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g090460.1
Common NameMTR_4g090460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 558aa    MW: 62097 Da    PI: 8.7907
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g090460.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07840336
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36
                      W t+E++ll  av ++G+g+W+ +a+++  gRt
  Medtr4g090460.1  8 TWGTWEELLLGGAVIRHGTGDWSVVAAELR-GRT 40
                     6*****************************.**9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002496.3E-6840IPR001005SANT/Myb domain
CDDcd001673.89E-4858No hitNo description
Gene3DG3DSA:1.10.10.607.4E-4955IPR009057Homeodomain-like
Gene3DG3DSA:1.20.920.106.3E-18345478IPR001487Bromodomain
SMARTSM002975.3E-20354458IPR001487Bromodomain
SuperFamilySSF473704.45E-19357456IPR001487Bromodomain
CDDcd043691.14E-15358453No hitNo description
PfamPF004391.5E-12363442IPR001487Bromodomain
PROSITE profilePS500149.601377439IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MGAEVIVTWG TWEELLLGGA VIRHGTGDWS VVAAELRGRT HSPSAITPEV CKAKYEELQQ  60
RYSGCTAWYE ELKKRRVAEL KRALEKSEDS IGSLESKLEF LKADKNEKRD DCHVDNNSVG  120
PELDVPSQKL ERVESSSKEL SKDGLSAGSF THQTDTNWSH ECQVPAMSSE DMEISAGVSG  180
SIEHEKVLNI DKLTDTAGKR DDCHVDNESV GPESHVPSQK LERVESSTKE TSKDGLSAGS  240
FTHQTQTNWF HECQIPAMSS EDMEITPGVS GSTEHEKVLN VDKLTETVYE GQGGCFKKRR  300
GKRKRKDCAR NINEASVRES DFSIVVSRLK ESSTSNCGEV VKSSGVTEEN TNLKKDGTKD  360
LMAILDSILE IKGASCFCRK HDSQKRQRYK QLIQRHMDFD TIRSRISNKT IDSVVQLFRD  420
MFLLTTNALM FYSKNTRQYK SALLMRDIVK EKLTENRRNV IHSNVDTVCA TPSLKVPSVR  480
PCNQKINAAK AADGSDPASG VSNKAKKPRT GGSKENSLSS VKTLHIKKAV GGSKKHEPST  540
PNLMKEMKEK KRRRTRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1296301KKRRGK
2298306RRGKRKRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.212460.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g090460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1478761e-128BT147876.1 Medicago truncatula clone JCVI-FLMt-14H15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608183.20.0uncharacterized protein LOC11446997 isoform X2
TrEMBLG7JQR80.0G7JQR8_MEDTR; Bromodomain protein
STRINGXP_004504999.11e-168(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.12e-17DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]