PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g088605.1
Common NameMTR_4g088605
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 276aa    MW: 31922.1 Da    PI: 5.5289
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g088605.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.8e-12107191283
                      EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                       k+l +sdv + gr+vlpk+ +ee    +++e+++++++d  sgr+W++kl+y  +++ ++y+l+ ++ + v+  +L+  D + ++
  Medtr4g088605.1 107 TKKLRKSDVKNYGRIVLPKREVEEKlPAPSREGIEVIFKDiYSGREWKLKLKYwiNGTTRMYILE-NTGDLVNHYKLCMEDYLGLY 191
                      69999*******************997788899*******999*********9544444446666.***************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-18103200IPR015300DNA-binding pseudobarrel domain
CDDcd100175.18E-14105199No hitNo description
SuperFamilySSF1019362.31E-14105200IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.2E-10106204IPR003340B3 DNA binding domain
PfamPF023621.5E-8107191IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MHTIPSMNQP HEGYSSSLMG QSHVPFIIQT TPQLVVEREE DKKFFEAKRC KIAREQRKQI  60
LKRIRSKSAS KFTEETSKRS PIYREIQERT PHVFYSPDGK RFEEILTKKL RKSDVKNYGR  120
IVLPKREVEE KLPAPSREGI EVIFKDIYSG REWKLKLKYW INGTTRMYIL ENTGDLVNHY  180
KLCMEDYLGL YEDELKNLYL CTKKACDLST VDLFPCANQG KEKEPPDQSV AQETNNTPMS  240
PILVDGTDGG GDDDDEQESS LDEFYESLDN IFDVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A1e-25982085116B3 domain-containing transcription factor LEC2
6j9c_D1e-25982085116B3 domain-containing transcription factor LEC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g088605.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457003.20.0B3 domain-containing transcription factor LEC2
TrEMBLA0A396I9W40.0A0A396I9W4_MEDTR; Putative transcription factor B3-Domain family
STRINGXP_004505388.11e-80(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.12e-26B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]