PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g088605.1 | ||||||||
Common Name | MTR_4g088605 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 276aa MW: 31922.1 Da PI: 5.5289 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.1 | 2.8e-12 | 107 | 191 | 2 | 83 |
EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 k+l +sdv + gr+vlpk+ +ee +++e+++++++d sgr+W++kl+y +++ ++y+l+ ++ + v+ +L+ D + ++ Medtr4g088605.1 107 TKKLRKSDVKNYGRIVLPKREVEEKlPAPSREGIEVIFKDiYSGREWKLKLKYwiNGTTRMYILE-NTGDLVNHYKLCMEDYLGLY 191 69999*******************997788899*******999*********9544444446666.***************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-18 | 103 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.18E-14 | 105 | 199 | No hit | No description |
SuperFamily | SSF101936 | 2.31E-14 | 105 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.2E-10 | 106 | 204 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-8 | 107 | 191 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0010344 | Biological Process | seed oilbody biogenesis | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MHTIPSMNQP HEGYSSSLMG QSHVPFIIQT TPQLVVEREE DKKFFEAKRC KIAREQRKQI 60 LKRIRSKSAS KFTEETSKRS PIYREIQERT PHVFYSPDGK RFEEILTKKL RKSDVKNYGR 120 IVLPKREVEE KLPAPSREGI EVIFKDIYSG REWKLKLKYW INGTTRMYIL ENTGDLVNHY 180 KLCMEDYLGL YEDELKNLYL CTKKACDLST VDLFPCANQG KEKEPPDQSV AQETNNTPMS 240 PILVDGTDGG GDDDDEQESS LDEFYESLDN IFDVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 1e-25 | 98 | 208 | 5 | 116 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 1e-25 | 98 | 208 | 5 | 116 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g088605.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013457003.2 | 0.0 | B3 domain-containing transcription factor LEC2 | ||||
TrEMBL | A0A396I9W4 | 0.0 | A0A396I9W4_MEDTR; Putative transcription factor B3-Domain family | ||||
STRING | XP_004505388.1 | 1e-80 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12348 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28300.1 | 2e-26 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g088605.1 |
Entrez Gene | 25493129 |
Publications ? help Back to Top | |||
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