PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g088245.1
Common NameMTR_4g088245
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 319aa    MW: 35933.2 Da    PI: 5.9296
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g088245.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.31.5e-32682081128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                      lp+G++F+P+d+e++ ++L++kv  +       ++++  +++   +i++++P++Lp  vk++ +  +fF++ +k+y+tg+rk+r+++      +
  Medtr4g088245.1  68 LPAGVKFDPNDQEIL-QHLEAKVLFDVpklhplIDEFIpTLEGEnGICYTHPEKLP-GVKKDGQIRHFFHRPSKAYTTGTRKRRKVQtdeegsE 159
                      799***********9.99****998885564332222222333336**********.667777788******************7444565557 PP

              NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +W++tgk+++v+  +g  +g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Medtr4g088245.1 160 TRWHKTGKTRPVII-EGVMKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 208
                      78************.999***********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-3764227IPR003441NAC domain
PROSITE profilePS5100532.66868227IPR003441NAC domain
PfamPF023652.0E-1469208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MTWCNDSDDQ DRGIELITST VIPGTSNEST LVTDDETKPT EVRTLTCPSC GHNIEFQDQG  60
GINELPGLPA GVKFDPNDQE ILQHLEAKVL FDVPKLHPLI DEFIPTLEGE NGICYTHPEK  120
LPGVKKDGQI RHFFHRPSKA YTTGTRKRRK VQTDEEGSET RWHKTGKTRP VIIEGVMKGF  180
KKILVLYTNY GRQKKPEKTN WVMHQYHLGS NEEEKDGELV VSKVFYQTQP RQCGGNNSNI  240
IKVTTSYENE LMINQGNVHD DNEAPPMEYY NPFINYDHVG HNLGSSESQF IPNLVMQGDG  300
SSFIRLAMDA NKAGLSRN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.150720.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g088245.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1421431e-165AC142143.29 Medicago truncatula chromosome 8 clone mth2-25c22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456941.10.0NAC domain-containing protein 10
SwissprotF4HY611e-120NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A072UMS30.0A0A072UMS3_MEDTR; NAC transcription factor-like protein
STRINGXP_004505101.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-122NAC domain containing protein 10
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]