PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g088125.2 | ||||||||
Common Name | MTR_4g088125 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | VOZ | ||||||||
Protein Properties | Length: 477aa MW: 52874.4 Da PI: 5.6607 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 438.5 | 8.7e-135 | 200 | 416 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaae 94 pppsaflgpkcalwdc+rpaqg +w+qdycssfha+lalneg+pg++pvlrp+gi+lkd+llf+alsak+qgk+vgipecegaatakspwna+e Medtr4g088125.2 200 PPPSAFLGPKCALWDCPRPAQGLDWCQDYCSSFHAALALNEGPPGMAPVLRPGGIGLKDNLLFSALSAKAQGKDVGIPECEGAATAKSPWNAPE 293 89******************************************************************************************** PP VOZ 95 lfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelk 188 lfdls+legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqv++efgglkrsyymdpqp+++fewhlyeyei+++d +alyrlelk Medtr4g088125.2 294 LFDLSVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVINEFGGLKRSYYMDPQPLNHFEWHLYEYEISKCDVCALYRLELK 387 ********************************************************************************************** PP VOZ 189 lvdekksakgkvskdsladlqkklgrlta 217 lvd+kk++k+++++ds+adlqk++++l+a Medtr4g088125.2 388 LVDGKKNSKARITNDSVADLQKQMVKLSA 416 ***************************87 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MKKGSKRSCK SASHSLFKDK AKNRVDDLQL MFLDLQFARK ESRTVDAAVL EEQVHQMLRE 60 WKSELNEPSP ASSLQQGGSL GSYSTDICRL LQLCEEEDDA SSPLTAPKPE PNDQALQAGG 120 NVIFQEGQQQ HDFPLVDERK HSTSGVQNVA ANQDGAALEY HQFDLQQDFD HNLYAGFNGT 180 GYCEEDAVPL ISSYLPSVCP PPSAFLGPKC ALWDCPRPAQ GLDWCQDYCS SFHAALALNE 240 GPPGMAPVLR PGGIGLKDNL LFSALSAKAQ GKDVGIPECE GAATAKSPWN APELFDLSVL 300 EGETIREWLF FDKPRRAFES GNRKQRSLPD YSGRGWHESR KQVINEFGGL KRSYYMDPQP 360 LNHFEWHLYE YEISKCDVCA LYRLELKLVD GKKNSKARIT NDSVADLQKQ MVKLSAEFPP 420 DNKRPAKGRA KINAKVGMGA VYPASHRMAP LSGTYEYGLA APYDYLVENT GDYYGT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.6928 | 0.0 | leaf| pod| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g088125.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT135616 | 0.0 | BT135616.1 Medicago truncatula clone JCVI-FLMt-3E8 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013456921.1 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_024637757.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A072UMQ9 | 0.0 | A0A072UMQ9_MEDTR; Putative transcription factor VOZ family | ||||
STRING | GLYMA07G32374.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g088125.2 |
Entrez Gene | 25493061 |
Publications ? help Back to Top | |||
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