![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g088065.1 | ||||||||
Common Name | MTR_4g088065 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 250aa MW: 27781.2 Da PI: 10.2298 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 18.8 | 2.9e-06 | 146 | 183 | 24 | 57 |
S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 p +++ +++ ++l ++ +V++WFqNr + k+ Medtr4g088065.1 146 EPAENKVKKIHEQLqgfgQVGAVNVSYWFQNRNSRSKQ 183 6889999999999999999*************777775 PP | |||||||
2 | Wus_type_Homeobox | 47.8 | 3.5e-16 | 145 | 185 | 25 | 65 |
Wus_type_Homeobox 25 rtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + P+++++++i ++L+ +G+++ NV yWFQNr +R++qk+ Medtr4g088065.1 145 VEPAENKVKKIHEQLQGFGQVGAVNVSYWFQNRNSRSKQKK 185 679************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-4 | 149 | 188 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MVWRQFLNRL PTKYNLSLRG VRLNSSLYCV GGCGRLETVN HILFNRAVLW SIWSESLKWL 60 GVLAVFVEGG FERLILFKGL VAGGKTVCER LGVILVSIIS SIWNARNAKE ASGSGVGLIS 120 CKECGILNVD LDWRICQICF GLIDVEPAEN KVKKIHEQLQ GFGQVGAVNV SYWFQNRNSR 180 SKQKKRILYN KKLKTQQNST PCNSLPQILT PPPNSFSSDH QKASIGFSNI NDVCEPKPPR 240 SQGNTTKSI* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g088065.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636460.1 | 1e-160 | WUSCHEL-related homeobox 9 | ||||
TrEMBL | A0A072UYM1 | 0.0 | A0A072UYM1_MEDTR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33880.1 | 1e-12 | homeobox-3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g088065.1 |
Entrez Gene | 25493054 |
Publications ? help Back to Top | |||
---|---|---|---|
|