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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g087300.2 | ||||||||
Common Name | MTR_4g087300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 143aa MW: 15599.8 Da PI: 9.1711 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.4 | 3.4e-05 | 33 | 72 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R ++i +++ L++l+ + +K + +++L++A++YI L Medtr4g087300.2 33 KDRKEKIGERIVALQQLVSPY-----GKTDTSSVLKEAMDYIGFL 72 6788999***********999.....9***************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.357 | 23 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-9 | 29 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.003 | 29 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-11 | 30 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.29E-5 | 33 | 77 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MMGHKRSPCS VDQSNYNSIA SKKQKPDLSI STKDRKEKIG ERIVALQQLV SPYGKTDTSS 60 VLKEAMDYIG FLHKQVKLLS APYLETAPAT QLQDTESCSL RSRGLCIVPV SFTNGVAEGN 120 GADIWAPIKT TSPKHEKDVS QF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g087300.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092520 | 1e-131 | BT092520.1 Soybean clone JCVI-FLGm-11K11 unknown mRNA. | |||
GenBank | KT031098 | 1e-131 | KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003608064.1 | 1e-103 | transcription factor bHLH153 isoform X1 | ||||
Refseq | XP_003608066.1 | 1e-103 | transcription factor bHLH153 isoform X3 | ||||
Refseq | XP_024638356.1 | 1e-103 | transcription factor bHLH153 isoform X3 | ||||
Swissprot | Q7XJU2 | 9e-52 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | G7JNL3 | 1e-101 | G7JNL3_MEDTR; BHLH transcription factor-like protein | ||||
TrEMBL | G7JNL5 | 1e-101 | G7JNL5_MEDTR; BHLH transcription factor-like protein | ||||
STRING | AES90261 | 1e-102 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 4e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g087300.2 |
Entrez Gene | 11444608 |
Publications ? help Back to Top | |||
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