PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g085700.1 | ||||||||
Common Name | MTR_4g085700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 306aa MW: 34113.6 Da PI: 7.3258 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.8 | 3.3e-12 | 92 | 139 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er RR+++++ f+ L llP++ p K +K++i+ Av++Ik+L+ Medtr4g085700.1 92 MHILTERERRKKMRNMFDSLHALLPEL---P-SKADKSTIVDAAVKHIKNLE 139 79999*********************6...3.8****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.827 | 88 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-15 | 91 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-15 | 91 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.17E-11 | 91 | 138 | No hit | No description |
Pfam | PF00010 | 1.1E-9 | 92 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-9 | 94 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MAKSVDHDQG VQTGFIWENH LWGDLPNSDH NLGESSKKRV DTKPLNQNEG INEAEAPVSK 60 KRNWGGVVIR SENNITTGEE KDKKYRDFDH EMHILTERER RKKMRNMFDS LHALLPELPS 120 KADKSTIVDA AVKHIKNLEE IKEKLEKKKQ EMLKSVSPLG SESSVINSQW HPYESREAFL 180 ADQGSSSYNN NLSNAIVTSN PSNAFSISPP QQVGFQTWSS QNVVLNICGG EAQFCICSTK 240 KPGLLTTIAL VLEKHKIDVI SANIMCNANG NFYMIMAHAK QASLGANSME ETYKQAALEI 300 MTRIA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g085700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148528 | 0.0 | AC148528.15 Medicago truncatula clone mth2-53h4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003607938.1 | 0.0 | transcription factor bHLH95 | ||||
TrEMBL | G7JK25 | 0.0 | G7JK25_MEDTR; Helix loop helix DNA-binding domain protein | ||||
STRING | AES90135 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4773 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 2e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g085700.1 |
Entrez Gene | 11444507 |
Publications ? help Back to Top | |||
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