PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g083680.1 | ||||||||
Common Name | MTR_4g083680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 18952.3 Da PI: 7.8927 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.6 | 1.4e-45 | 15 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca+dC +apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++l Medtr4g083680.1 15 PCAACKLLRRRCAQDCLFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQL 108 7********************************************************************************************* PP DUF260 95 allkee 100 a++++e Medtr4g083680.1 109 AVAQAE 114 *99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.804 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-45 | 15 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 175 aa Download sequence Send to blast |
MKESGGNKKQ GAASPCAACK LLRRRCAQDC LFAPYFPADE PHKFANVHKV FGASNVNKML 60 QDLPEHQRGD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDVLQTQLAV AQAEAVHLRV 120 RQTASSFWNS AGHSPTSPTY SGSPSSKINE SQQAKNIFDM DMVVDQAAYG DSMW* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-50 | 11 | 114 | 7 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-50 | 11 | 114 | 7 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g083680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003607861.1 | 1e-129 | LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 2e-73 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | G7JIR8 | 1e-128 | G7JIR8_MEDTR; LOB domain protein | ||||
STRING | AES90058 | 1e-129 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-75 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g083680.1 |
Entrez Gene | 11440908 |
Publications ? help Back to Top | |||
---|---|---|---|
|