PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g083390.6 | ||||||||
Common Name | MTR_4g083390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 134aa MW: 15030 Da PI: 4.5704 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37 | 6e-12 | 47 | 105 | 37 | 96 |
EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 t+ +g+sW ++++ ++k +++ + W++F+++n Lk gD +vF+l+++se+e v+kv Medtr4g083390.6 47 TILKYRGKSWGMTYNGQNKTKQF-DSVSWEKFAEDNYLKLGDACVFELMKNSEEEIVFKV 105 556789********766666665.5669*********************99999998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-13 | 11 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-12 | 12 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.27E-10 | 13 | 109 | No hit | No description |
SMART | SM01019 | 1.2E-4 | 15 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-10 | 46 | 105 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.602 | 47 | 111 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MQTGGIEPLT GEPYFHVVLS KTHLSTRYGM GPSSSICEEL PSKEVPTILK YRGKSWGMTY 60 NGQNKTKQFD SVSWEKFAED NYLKLGDACV FELMKNSEEE IVFKVQILRG EEEPILLSEF 120 PGTGERDAPF VID* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.5198 | 0.0 | flower| glandular trichome| leaf| root| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g083390.6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC202467 | 1e-175 | AC202467.11 Medicago truncatula clone mth2-13m8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024637421.1 | 8e-88 | B3 domain-containing protein Os04g0386900 isoform X2 | ||||
TrEMBL | A0A396IBD9 | 3e-94 | A0A396IBD9_MEDTR; Putative transcription factor B3-Domain family | ||||
STRING | AES90030 | 2e-94 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-06 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g083390.6 |
Entrez Gene | 11441927 |
Publications ? help Back to Top | |||
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