PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g081980.1
Common NameMTR_4g081980
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 274aa    MW: 31221.4 Da    PI: 6.7871
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g081980.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-1288136355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++h  +Er RR++++s ++ L++l+P++    + K++ ++i+e++v++I +L+
  Medtr4g081980.1  88 EKHARAERERRKKMRSMLDSLQDLIPHL----AYKVDSVTIVEETVKHIEYLK 136
                      6899***********************7....69*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.59E-983137No hitNo description
PROSITE profilePS5088813.12285135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1285148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-1088135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1288151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-891141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAMTLDDDQW IHEFFMGGNQ SSGPFNSDKS DENKEPLDIE SMSQNVEKEE ETLVNKKQCE  60
GGVTSESGNL NVKNDKGKDI NCRISSHEKH ARAERERRKK MRSMLDSLQD LIPHLAYKVD  120
SVTIVEETVK HIEYLKQTLE KLKLQKKEKL KSFSEAFTSD QRPFSLNSQM VTSNALAFQQ  180
MWFSQNVTFN ICGDEAQFCI YTTKKPSLLT TIFYVMEKHK IDVIHANILC NNNAKSCMIQ  240
AHVKRATHES QNAISVEESY KLAAGEIRGL LIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g081980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400300.0AC140030.6 Medicago truncatula clone mth2-7g24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7JG890.0G7JG89_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES899380.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-08bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]