PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g081870.1 | ||||||||
Common Name | MTR_4g081870, NAC969 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 272aa MW: 31265.3 Da PI: 7.0085 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.1 | 4.7e-55 | 9 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+v+yL++++++k++++ ++i+evdiyk++Pw+Lp k + ee+ewyfFs+r++ky++g r+nrat sgyWkatg+dk+++s Medtr4g081870.1 9 LPPGFRFHPTDEELIVHYLCNQATSKPCPA-SIIPEVDIYKFDPWELPDKSEFEENEWYFFSPRERKYPNGVRPNRATLSGYWKATGTDKAIKS 101 79****************************.89***************8888999*************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kk+Lvfykgr pkg+ktdW+mheyrl Medtr4g081870.1 102 -GSKQIGVKKSLVFYKGRPPKGVKTDWIMHEYRL 134 .99*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.12E-66 | 5 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.205 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-27 | 10 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MESSASSELP PGFRFHPTDE ELIVHYLCNQ ATSKPCPASI IPEVDIYKFD PWELPDKSEF 60 EENEWYFFSP RERKYPNGVR PNRATLSGYW KATGTDKAIK SGSKQIGVKK SLVFYKGRPP 120 KGVKTDWIMH EYRLIGSQKQ TSKHIGSMRL DDWVLCRIYK KKHMGKTLQQ KEDYSTHQFN 180 DSIITNNDDG ELEMMNLTRS CSLTYLLDMN YFGPILSDGS TLDFQINNSN IGIDPYVKPQ 240 PVEMTNHYEA DSHSSITNQP IFVKQMHNYL A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-71 | 9 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-71 | 9 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-71 | 9 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-71 | 9 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-71 | 9 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-71 | 9 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-71 | 9 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-71 | 9 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-71 | 9 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-71 | 9 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-71 | 9 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-71 | 9 | 162 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-71 | 9 | 162 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-71 | 9 | 162 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.3106 | 0.0 | flower| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g081870.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN833713 | 0.0 | JN833713.1 Medicago truncatula NAC969 (NAC969) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003607731.1 | 0.0 | NAC transcription factor 29 | ||||
Swissprot | K4BWV2 | 1e-107 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | G7JG79 | 0.0 | G7JG79_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES89928 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4103 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-109 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g081870.1 |
Entrez Gene | 11445056 |
Publications ? help Back to Top | |||
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