PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g079240.2 | ||||||||
Common Name | MTR_4g079240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | VOZ | ||||||||
Protein Properties | Length: 505aa MW: 56628.3 Da PI: 6.0997 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 370.2 | 6.8e-114 | 243 | 477 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaae 94 pppsafl+pkcalwdc+rpaqg e++qdycss h+ la e+ g tp+lrp+gid+kdg+lfaa+ ak+ gkevgip+cegaa+ak+pwna+e Medtr4g079240.2 243 PPPSAFLAPKCALWDCFRPAQGLEQCQDYCSSNHELLAKSED-EGKTPILRPGGIDVKDGPLFAAVLAKTLGKEVGIPKCEGAASAKAPWNASE 335 89************************************9887.69************************************************* PP VOZ 95 lfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineld.......... 178 lfd+slleget+rewlffdkprraf+sg+rkqr +pdy grgwhesrkqvmke+gg+krsyymdpqp ++ ewhlyeyein+ + Medtr4g079240.2 336 LFDISLLEGETVREWLFFDKPRRAFDSGSRKQRNIPDYCGRGWHESRKQVMKEHGGQKRSYYMDPQPVDYVEWHLYEYEINNHEgclpeknnhn 429 ********************************************************************************98652222222222 PP VOZ 179 a.........lalyrlelklvdekksakgkvskdsladlqkklgrlta 217 +alyrlelk vd+kks+k kv+k+sladlq+k+g+lta Medtr4g079240.2 430 GclstkinhgCALYRLELKRVDKKKSPKVKVTKESLADLQNKMGKLTA 477 02223333338***********************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MMKENSGGKY GSSSQKSMKE KERHMVNKIQ GIFTNLQSAR KESRATDILI IEEQMHQLLR 60 EWKAELESPA TSLNDGSLGS FPGELAQLLQ GFEEKDDAIS PLTKPGMFNT DYHQNNINDS 120 NYEFYQEKCF DNNQSLGHTF EGSASTPFSS PLNSSGMAQL DFHSFGLNQD MDHNAVGHSS 180 DLIGRHKFCQ DHILGYNTEV KNSESAQFNL EEGFDEYDQL FGDNYTKNFG DNFIPNILPN 240 IRPPPSAFLA PKCALWDCFR PAQGLEQCQD YCSSNHELLA KSEDEGKTPI LRPGGIDVKD 300 GPLFAAVLAK TLGKEVGIPK CEGAASAKAP WNASELFDIS LLEGETVREW LFFDKPRRAF 360 DSGSRKQRNI PDYCGRGWHE SRKQVMKEHG GQKRSYYMDP QPVDYVEWHL YEYEINNHEG 420 CLPEKNNHNG CLSTKINHGC ALYRLELKRV DKKKSPKVKV TKESLADLQN KMGKLTAAAP 480 SPDDGKSVKG KTEAKSQNIG LPEY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7122 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g079240.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC171618 | 0.0 | AC171618.20 Medicago truncatula clone mth2-144n17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003607530.2 | 0.0 | transcription factor VOZ1 | ||||
Refseq | XP_024638008.1 | 0.0 | transcription factor VOZ1 | ||||
TrEMBL | G7JUY7 | 0.0 | G7JUY7_MEDTR; Putative transcription factor VOZ family | ||||
STRING | AES89727 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-118 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g079240.2 |
Entrez Gene | 11441253 |
Publications ? help Back to Top | |||
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