![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g077803.1 | ||||||||
Common Name | MTR_4g077803 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 345aa MW: 37887.1 Da PI: 5.4937 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 87.2 | 1.2e-27 | 93 | 175 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg Medtr4g077803.1 93 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpinsvltpdkqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 175 689********...*****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 1.5E-129 | 2 | 344 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 7.1E-46 | 88 | 180 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 4.1E-34 | 92 | 175 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 3.1E-25 | 94 | 175 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.04E-21 | 95 | 176 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 1.72E-43 | 180 | 283 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 1.46E-41 | 181 | 292 | No hit | No description |
SMART | SM01138 | 7.2E-70 | 182 | 342 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 9.2E-41 | 183 | 297 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 345 aa Download sequence Send to blast |
MGTRSQQSCV DEDEEEFIGC GTTISGQSGS TSRSAGGLAS SRSEQTIGTA AGDNTALRLN 60 HLDIQDDDAA SQGVVASKKK KRGQQRATGG DKSGRGLRQF SMKVCEKVES KGRTTYNEVA 120 DELVAEFADP INSVLTPDKQ QYDEKNIRRR VYDALNVLMA MDIISKDKKE IQWKGLPRTS 180 LNDIEELKTE RLGLRNRIER KSSYLQELEE QFVGLQNLVK RNEQLYSSGN PPSGGVSLPF 240 ILVQTRPHAT VEVEISEDMQ LVHFDFNSTP FELHDDNYVL KAMEFGDRTQ SDIVTHNVTD 300 GGEGSSMSGM HQSQVPPSAS SVSTRPPTSP PLPGILKARV KQEH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 5e-39 | 86 | 180 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g077803.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013456630.1 | 0.0 | transcription factor-like protein DPB isoform X1 | ||||
Swissprot | Q9FNY2 | 1e-150 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | A0A072UMP7 | 0.0 | A0A072UMP7_MEDTR; Putative transcription factor E2F-DP family | ||||
STRING | XP_004505604.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3321 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-144 | Transcription factor DP |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g077803.1 |
Entrez Gene | 25492896 |
Publications ? help Back to Top | |||
---|---|---|---|
|