PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g070320.1
Common NameMTR_4g070320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 345aa    MW: 38778 Da    PI: 6.9922
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g070320.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-10153200455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Medtr4g070320.1 153 SHSLAERVRREKISERMKYLQDLVPGC----NKIAGKAGMLDEIINYVQSLQ 200
                      8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.29E-9147204No hitNo description
SuperFamilySSF474599.16E-17147218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.364149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-17149216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-9155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MLHCLNTSGN LVGGIISDMT VLERQRARKK FQHEHEQDQQ FFMVGCDSAL GEVVANSMKP  60
GDLGFENVEE TVKKRKADHK VDMKSKDKRI KVSVEEGESK ITEQIKGNKN TKLKNRENCD  120
DVGSKENSKG SEIQNHKPDY IHVRARRGQA TDSHSLAERV RREKISERMK YLQDLVPGCN  180
KIAGKAGMLD EIINYVQSLQ RQVEFLSMKL AAVNPRLDFN IDELFAKEVF TQNFQMMQSE  240
MSNPAYLQFN SAQQQVSCCG GLINNMGILP PEIGVRRNIN APASASLPEI FLDPSCFTHI  300
LPSSTWEGDF QNLHSVDFDQ GRSTSFPSQP FTGMIEASNL KMEM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.171340.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g070320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1496360.0AC149636.14 Medicago truncatula clone mth2-180a12, complete sequence.
GenBankAC1741420.0AC174142.12 Medicago truncatula clone mth2-69j4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606932.10.0transcription factor bHLH63
TrEMBLG7JHB90.0G7JHB9_MEDTR; Putative transcription factor bHLH family
STRINGAES891290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-58cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]