PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g067320.2 | ||||||||
Common Name | MTR_4g067320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 240aa MW: 26422 Da PI: 4.6249 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.4 | 2.5e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lC++C +e H H++ Medtr4g067320.2 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAAnklaskHQR 44 7*****************************65667777765 PP | |||||||
2 | zf-B_box | 28.3 | 3.5e-09 | 53 | 85 | 2 | 34 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeH 34 + +kC+ +++k++ +fC +++ l+C+dC + +H Medtr4g067320.2 53 KLPKCDICQDKPAFIFCVEDRALFCKDCDEPIH 85 789***************************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.3 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.06E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 8.9E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.0E-5 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.6E-15 | 52 | 99 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.802 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.6E-8 | 52 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.26E-6 | 55 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090351 | Biological Process | seedling development | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003712 | Molecular Function | transcription cofactor activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MKIQCDVCEK APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SNKLPKCDIC 60 QDKPAFIFCV EDRALFCKDC DEPIHVAGSL SGNHQRFLAT GIRVALASSC TKDNEKSQVE 120 PSNPDTQQVP VKVSPPQQVP SFASPWAVDD FLELTGFDSP DKQSMEFGEL EWLSDAGLFN 180 DQFPQEGLAA AEVPQLPVMH ASSVYPYKAS KSYMSYKKPR IEVRHEDDDD EHFMVPDLG* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.15272 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: High expression in leaves and lower in roots and flowers. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g067320.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT139417 | 0.0 | BT139417.1 Medicago truncatula clone JCVI-FLMt-10G6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013456310.1 | 1e-176 | B-box zinc finger protein 24 | ||||
Swissprot | Q96288 | 1e-102 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
TrEMBL | A0A072UWX3 | 1e-176 | A0A072UWX3_MEDTR; Salt tolerance-like protein | ||||
STRING | GLYMA11G13570.1 | 1e-138 | (Glycine max) | ||||
STRING | GLYMA15G03400.1 | 1e-138 | (Glycine max) | ||||
STRING | XP_007131941.1 | 1e-138 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G06040.1 | 2e-94 | DBB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g067320.2 |
Entrez Gene | 25492672 |
Publications ? help Back to Top | |||
---|---|---|---|
|