 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Medtr4g064200.1 |
Common Name | MTR_4g064200 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
Family |
GRAS |
Protein Properties |
Length: 653aa MW: 73442.8 Da PI: 5.985 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Medtr4g064200.1 | genome | Mt | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 377.4 | 1.7e-115 | 283 | 649 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96
+lL++cA+av s d+++a+ +L+++++++sp+gd +qRla+yf+ +L+arl+ ++ +yk l++s+++ + l a+k++ +sP+ ++s++
Medtr4g064200.1 283 TLLTQCAQAVGSYDQRNANDILKQIRQHSSPSGDGLQRLAHYFADGLEARLSA-GTPMYKLLQSSSAA-----DMLRAHKVYITASPFQRMSNF 370
69**************************************************9.99999988887775.....999****************** PP
GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
+aN++Il+ ve+++ +HiiDf++ +G+QWp+L+q L++R++gpp+lRiTg++ p++g +e++eetg+rL k+++++gvpfe+n +a+++++
Medtr4g064200.1 371 LANRTILKLVENKSSLHIIDFGVFYGFQWPCLIQRLSERSGGPPRLRITGIDLPQPGfrPAERVEETGRRLVKYCKRFGVPFEYNC-LAQKWDT 463
********************************************************9*****************************.6****** PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.ee 281
l+le+L+++++E+++Vn+ ++l+++ de+v+ + +rd+vL+l+++++P+++++ + +n++ Fl+rf eal ++s+lfd+lea++pre+ +
Medtr4g064200.1 464 LRLEDLKIDREEVTVVNCLHRLKNVSDETVTENCPRDAVLRLIRRINPNIFIHGVVNGTYNAPFFLTRFREALFHFSSLFDMLEATVPREDdQY 557
*****************************************************************************************99899 PP
GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
r ++E+ l+gr++vnv+acegaer+er et+++W+ r ++a Fk++pl + ++ +k +++k + + + v+e+ +++++gWk+r L++vS+W
Medtr4g064200.1 558 RLMIEKGLFGRDAVNVIACEGAERVERPETYKQWQVRNKRARFKQLPLAPELVDRVKEMVKKEYPKDFVVDEDGKWVLQGWKGRILLAVSCW 649
***************************************************************9777************************* PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
Protein Sequence Length: 653 aa
Download sequence Send
to blast |
MFSTETLVEN FPGSVNGCMF GNIPVSVFSN QNPENAFKFE DSNSISPSSD SVPSSVITSN 60 GESSESSKYS NPILRYISDI LMDEEDLETK PCMLQDCLKL QAAEKSFYDV LGSVTGTSSS 120 SESYSNCSYN TDNSVVDCDS PENNAYEVFD KIPYDPRGFF GSPSDVWKMN EEGSFVLGSR 180 GLGEKRGYLM NCNDIGISHE EDLRRNKVSA VYYDDTELSE MFDDVLLCKD GKSPSIFCDN 240 SESSQSQISG SGRSNGTSNG KTSRSKKGSG KGKKLSTTVD LWTLLTQCAQ AVGSYDQRNA 300 NDILKQIRQH SSPSGDGLQR LAHYFADGLE ARLSAGTPMY KLLQSSSAAD MLRAHKVYIT 360 ASPFQRMSNF LANRTILKLV ENKSSLHIID FGVFYGFQWP CLIQRLSERS GGPPRLRITG 420 IDLPQPGFRP AERVEETGRR LVKYCKRFGV PFEYNCLAQK WDTLRLEDLK IDREEVTVVN 480 CLHRLKNVSD ETVTENCPRD AVLRLIRRIN PNIFIHGVVN GTYNAPFFLT RFREALFHFS 540 SLFDMLEATV PREDDQYRLM IEKGLFGRDA VNVIACEGAE RVERPETYKQ WQVRNKRARF 600 KQLPLAPELV DRVKEMVKKE YPKDFVVDED GKWVLQGWKG RILLAVSCWV PS*
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC174290 | 0.0 | AC174290.6 Medicago truncatula clone mth2-52e11, complete sequence. |