PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g061200.3 | ||||||||
Common Name | MTR_4g061200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | AP2 | ||||||||
Protein Properties | Length: 395aa MW: 43906.7 Da PI: 7.5363 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.6e-17 | 130 | 179 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Medtr4g061200.3 130 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 179 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.1 | 4.5e-13 | 222 | 272 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ + +g Medtr4g061200.3 222 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIQNNG 272 89********.7******5553..2.26**********99*********988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.2E-9 | 130 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-15 | 130 | 188 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.6E-31 | 131 | 193 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.91E-11 | 131 | 186 | No hit | No description |
PROSITE profile | PS51032 | 17.411 | 131 | 187 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-17 | 131 | 187 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-8 | 222 | 271 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.10E-24 | 222 | 282 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-16 | 222 | 281 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.251 | 223 | 280 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-28 | 223 | 286 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-15 | 223 | 281 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 224 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-5 | 262 | 282 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MLDLNLNDSN STDSTQNQNH NSPMISKNFP QTVDESGTSN SSIVNADGDE DSCSTRDFTL 60 SFDILKTEGS NSNNVVTKEF FPVKLQATSS SFSMKNGSVD FSINQNEEMK IVQAPQQVKK 120 SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV 180 GADINFNLND YDDDLKQTKN LSKEEFVQIL RRQSNGFSRG SSKYRGVTLH KCGRWEARMG 240 QFLGKKYIYL GLFDSEVEAA RAYDKAAIQN NGREAMTNFE ASTYEGEMKS AAINEGGSQN 300 LDLNLGIATP GPSPRENWGQ LHFPSSVPYT MQAGRSSKME TNVSGIGDPS LKRLLATEER 360 HSLWNGMYPA FFSNEVISPS SYLVLLLESI ACFS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g061200.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC145164 | 0.0 | AC145164.11 Medicago truncatula clone mth2-27j21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013456044.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
Swissprot | Q9SK03 | 1e-110 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A072UKX7 | 0.0 | A0A072UKX7_MEDTR; AP2-like ethylene-responsive transcription factor | ||||
STRING | AES88712 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-128 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g061200.3 |
Entrez Gene | 11406478 |
Publications ? help Back to Top | |||
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