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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g052950.1 | ||||||||
Common Name | MTR_4g052950, NF-YB4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NF-YB | ||||||||
Protein Properties | Length: 141aa MW: 15541.4 Da PI: 5.0029 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 40.8 | 5.4e-13 | 4 | 99 | 5 | 95 |
NF-YB 5 drflPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++lP + v r++k+ l + ++ i+ kda e + fi ++++ a+d c++ kr+ in++d++ al + f ++v plk l+++r+ ++ Medtr4g052950.1 4 TEELPKTIVRRVVKEKLSTcsdDGDIAvhKDALLAFSESARIFIHYLSATANDICRESKRQIINAEDVFKALEETEFAEFVGPLKDSLEEFRKKNA 99 567999999999999987522245544338999999********************************************************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.9E-32 | 5 | 130 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-9 | 6 | 75 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.38E-24 | 7 | 120 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MAETEELPKT IVRRVVKEKL STCSDDGDIA VHKDALLAFS ESARIFIHYL SATANDICRE 60 SKRQIINAED VFKALEETEF AEFVGPLKDS LEEFRKKNAG KKAAVPKGKG DEKGKGDEEK 120 RKRKAEGEPS DKGDGVDDDQ * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.11105 | 0.0 | flower| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g052950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ918277 | 0.0 | JQ918277.1 Medicago truncatula nuclear transcription factor Y subunit B4 (NF-YB4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013455824.1 | 4e-96 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | I3TAW2 | 8e-95 | I3TAW2_MEDTR; Class 2 transcription repressor NC2, beta subunit | ||||
STRING | XP_004506183.1 | 1e-72 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-41 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g052950.1 |
Entrez Gene | 25492285 |
Publications ? help Back to Top | |||
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