PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g050300.1

Common Name

MTR_4g050300

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

YABBY

Protein Properties

Length: 180aa MW: 20198.2 Da PI: 8.8315

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g050300.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	208.7	2.1e-64	7	159	6	169
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 ++e+vCyv+CnfCntilav+vP++sl+++vtvrCGhC++llsvn+ + +l + k+++ +e+ +++ e s+s + + Medtr4g050300.1 7 ATERVCYVHCNFCNTILAVNVPYSSLLTIVTVRCGHCANLLSVNMVAPLLQPFPPPQLPQPQKQHIIDEEASSK----------EIGSSSSKCN 90 79**************************************99887776666666666666666665544332..........2223333333 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 k+ + e e pr+pp irP ekr rvPsaynrfikeeiqrikasnPdishreafs aaknWahfP+ihfg Medtr4g050300.1 91 KIASFEAVEHPRIPP-IRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFG 159 444556778899999.9**************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.3E-69	7	159	IPR006780	YABBY protein
SuperFamily	SSF47095	2.23E-7	106	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.2E-4	114	154	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MSMDMIATER VCYVHCNFCN TILAVNVPYS SLLTIVTVRC GHCANLLSVN MVAPLLQPFP 60 PPQLPQPQKQ HIIDEEASSK EIGSSSSKCN KIASFEAVEH PRIPPIRPIE KRHRVPSAYN 120 RFIKEEIQRI KASNPDISHR EAFSSAAKNW AHFPHIHFGK QQAKLDHGEG TREKTNGFY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.3050	0.0	flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g050300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090811	1e-126	BT090811.1 Soybean clone JCVI-FLGm-5K20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003605973.1	1e-132	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	1e-69	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	G7JER5	1e-131	G7JER5_MEDTR; Plant-specific transcription factor YABBY family protein
STRING	AES88170	1e-132	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	7e-51	YABBY family protein

Link Out ? help Back to Top
Phytozome	Medtr4g050300.1
Entrez Gene	11446936

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]