PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g049790.1
Common NameMTR_4g049790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 564aa    MW: 62132.5 Da    PI: 8.2551
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g049790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.21.2e-26312370259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg +WrKYGqK  kg+ +p++YYrC++a gCpv+k+v+r+a d++vv +tYeg+Hnh+
  Medtr4g049790.1 312 TDGSQWRKYGQKLPKGNSCPKAYYRCSTAhGCPVRKHVQRCALDKTVVMTTYEGNHNHP 370
                      69************************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-29297372IPR003657WRKY domain
SuperFamilySSF1182904.05E-24305372IPR003657WRKY domain
PROSITE profilePS5081128.897306372IPR003657WRKY domain
SMARTSM007741.4E-29311371IPR003657WRKY domain
PfamPF031062.1E-22313370IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MASVPVNNNS FPEDTNNLEL KLSPNKNMDA THSTIPFLVN IRSSNENQNS PISSHETKIE  60
FDFFKDNNND HQVVSASVTD NDHIHTDTSS LLELKLSLGP NPITTNTSSD QSMMDDGMSP  120
NSKEKRTKST EMAILQGELE EAKMENCRLK LMYDLLRTDY NYMRGRFERM MQDHRGKKLK  180
GKEVFDGKFK EKTRTENGGV LGPRKFMDLG STTNKVKEVK VQEVFDRQFG ENMRIKNGGE  240
LMKRKFDDAG LATNKVKEVK GKEVSQAIKS IDFASNEIVL SKNEDANVDN VEDSLTKARV  300
CIKARSEETM ITDGSQWRKY GQKLPKGNSC PKAYYRCSTA HGCPVRKHVQ RCALDKTVVM  360
TTYEGNHNHP LPAAAKEMAK TTSAAAKMLL SASTSSNDGQ LNANLLTRTL LPCSSRIATI  420
SASAPYSTIT IDYTQSPNTP QRNPDQFQTP LIPQSSANSS ASLICQIPNQ NQSKFSRLHM  480
SKDAADPSQL LAIPNITAQT VNAAIAAVTS IIGDTQPNNN IVVADNNNCN NVNEGNSNGS  540
NNNVTEAKCN RNITFGNNND GKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21302373878Probable WRKY transcription factor 4
2lex_A1e-21302373878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g049790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636301.10.0probable WRKY transcription factor 31
TrEMBLA0A072UJV50.0A0A072UJV5_MEDTR; WRKY1b transcription factor
STRINGAES880860.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86634121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-71WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]