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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g039400.1 | ||||||||
Common Name | MTR_4g039400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 83aa MW: 8998.1 Da PI: 7.636 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.8e-05 | 6 | 29 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+dC+ F+++ L +H H Medtr4g039400.1 6 FSCSDCNAKFPSPQVLAVHVIEqH 29 89*****************98775 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MTKAKFSCSD CNAKFPSPQV LAVHVIEQHH SNFILESSAK SQPPNHQPQP QNTPPPHVQP 60 IGLSQPPNVR TLNLDPPSKS DE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g039400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC136506 | 1e-137 | AC136506.10 Medicago truncatula clone mth2-33c8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | G7JTJ4 | 3e-51 | G7JTJ4_MEDTR; Uncharacterized protein | ||||
STRING | AES87961 | 5e-52 | (Medicago truncatula) |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g039400.1 |
Entrez Gene | 11443383 |
Publications ? help Back to Top | |||
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