PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g035820.1
Common NameMTR_4g035820
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 669aa    MW: 77894.5 Da    PI: 7.0301
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g035820.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.71.4e-2190181290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnHela 90 
                      fY++YA++ GFs++k +  k+  ng i +r+  C +egk++ +  + +ke+r+r++++++Cka+l++k++k       +w+vt++  eHnH l 
  Medtr4g035820.1  90 FYKRYAYQQGFSIKKGRFVKK--NGVICRRDIFCHREGKASLKIMEPSKEQRNRQSSKCECKAHLRIKLQKshdmfPTEWRVTSFIVEHNHGLL 181
                      9**************987776..*********************************************99975444469************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.6E-1990181IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MDNISATKTN NKISFDLNEY PIEDIFIDNG SSEIISEQLD HNLVENVEKE NSVLSLNNGT  60
NEEVDKDGTE TNCVPFVGQI FLSEEEAYVF YKRYAYQQGF SIKKGRFVKK NGVICRRDIF  120
CHREGKASLK IMEPSKEQRN RQSSKCECKA HLRIKLQKSH DMFPTEWRVT SFIVEHNHGL  180
LTQTEVRFLP AYRIILEDDR ECIFLLKEGG LSVRQIMRVI ELEKNVKHGY LPYTEKDIRN  240
LYVKANKKIE GSDVMDLLKY CEGAKKTSSK FQYAYTLDEE RRLEHIFWSS ASCFDWYQKY  300
GDVVVFDTTY KVNSYEMPFG IFCGNYWALA YLRDHFFGGM TTTGRSESIN AFIKRFINSH  360
TSLTDFAKQV DVAIDDIKQK EDHDIMLEKC KGSNMKLMSP LQEQAHCVLT RFSFQKFQEE  420
LASIFLHKDC HEIPSNYLPS RWLLQVSYDD NDVESQVNVV GEEQVLDCNN EPQPQHVVLC  480
PPKSKPKGRP KRRRLKGGKE LSHNMNTVDY AEEYAYHLEW NFYKMNEDIS LIMYHGGRFV  540
RNGRGNREYT GKGRRVWDVD TYLVCIPDLK KMVVECGNYG NVEGMQWMRK EFGEDYDLGL  600
RPLSVDSDGL IPAVQEVMPG VAHRYCGMHL WKNFTKNWKD KELRGVVWDC AKSTTVSQFN  660
RYMDRVKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1490494KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g035820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1518250.0AC151825.36 Medicago truncatula clone mth2-48b19, complete sequence.
GenBankAC2025990.0AC202599.13 Medicago truncatula clone mth2-88p11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024630878.10.0protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A072UI160.0A0A072UI16_MEDTR; FAR1 DNA-binding domain protein
STRINGAES623830.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1516549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.14e-71FAR1-related sequence 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]