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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Medtr4g035430.1 |
Common Name | MTR_4g035430 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family |
ERF |
Protein Properties |
Length: 223aa MW: 25124.7 Da PI: 5.3697 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Medtr4g035430.1 | genome | Mt | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 51.5 | 2.5e-16 | 30 | 80 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s ++GVr ++ +gr+v+eIr p g+++r++lg+f +ae+Aa+a++ a+ l+g
Medtr4g035430.1 30 SVFHGVRKRS-WGRYVSEIRLP---GQKTRIWLGSFESAEMAARAYDSAAFFLKG 80
6799***888.**********8...557***********************9988 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MSITKESESQ SQAEARPGSI TKRSSRKGDS VFHGVRKRSW GRYVSEIRLP GQKTRIWLGS 60 FESAEMAARA YDSAAFFLKG NSASLNFPEE VEFLPRPLSS SRRDIQSAAS KAAHQRSHHH 120 QQQEEQLRGV TPSSSSSTRM NENNIINNSD DNIISGNNNV NDFSIEMMEW WKEEECVSTT 180 SFWDVEDAPL MSPTRVGSIF GDMMTWNEVF NFNDDNSLVY VP*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gcc_A | 2e-15 | 32 | 91 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 6e-15 | 32 | 90 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC145289 | 0.0 | AC145289.62 Medicago truncatula clone mth2-7g18, complete sequence. |
GenBank | AC160842 | 0.0 | AC160842.52 Medicago truncatula clone mth2-27a2, complete sequence. |
GenBank | AC225544 | 0.0 | AC225544.5 Medicago truncatula clone mth2-75e9, complete sequence. |