PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g031910.1 | ||||||||
Common Name | MTR_4g031910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26044.3 Da PI: 8.3121 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.6 | 2.2e-15 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+ r+ t+ kR++g+lKK ELS+LC+++++ +++++ Medtr4g031910.1 10 FIVNDAARKATYKKRKKGLLKKVAELSTLCGIDACAMVYGP 50 7899***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.432 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.77E-20 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-23 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-15 | 10 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MTRRKVKLAF IVNDAARKAT YKKRKKGLLK KVAELSTLCG IDACAMVYGP YELQPEIWPS 60 PEGVQSVLSK FMALHEFQKC KKMMNQETFL TQSVLKAEEK LKKQRKENRE QEMTIIMSQC 120 LNEGRVVHDN MSTMDMSYLA WLIDHKLKDV ARRLEAWDNN DQNQIMAIQN KVQLEMAATV 180 PPPPPLAPSI NNDDIMQSQL LMDSMVAGNV TETVPFGEVN SGVWSDLLP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RRKVKLAFIVNDAARKATYKKRK |
2 | 21 | 25 | KKRKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g031910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC203555 | 0.0 | AC203555.16 Medicago truncatula clone mth2-58e9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003605474.1 | 1e-172 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 3e-47 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | G7JM29 | 1e-170 | G7JM29_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AES87671 | 1e-171 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 6e-44 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g031910.1 |
Entrez Gene | 11432305 |
Publications ? help Back to Top | |||
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