PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g028610.1
Common NameMTR_4g028610
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 486aa    MW: 53971.7 Da    PI: 6.5649
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g028610.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00128097219
                     EETTTTEEESSHHHHHHH CS
          zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                     +C++Cgk F ++ ++  H
  Medtr4g028610.1 80 VCEHCGKEFFSWKSFLEH 97
                     6*************9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.8E-41335IPR007087Zinc finger, C2H2
SMARTSM003552.91335IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.66E-51335No hitNo description
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-57498No hitNo description
SMARTSM003551707999IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.2E-8226249No hitNo description
PROSITE profilePS5015710.076227254IPR007087Zinc finger, C2H2
PfamPF139121.4E-9227251IPR007087Zinc finger, C2H2
SMARTSM003550.13227249IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
SuperFamilySSF576674.2E-8307334No hitNo description
PfamPF139123.8E-13311335IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681312334IPR007087Zinc finger, C2H2
SMARTSM003550.51312334IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280314334IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MALIVDQQSN FKHFCKICKK GFGCGRALGG HMRAHGIGDE TSQMDDDDPA SDWEGGNVPP  60
SNKRMYSLRT NPNKLKSCRV CEHCGKEFFS WKSFLEHGKC NSDDADEEFI ISSPESDAMA  120
DDGDGVSARR GCGWSKRKRS MRTKVGSYNN NYNNPSSEEE DLANCLMMLS NAIVDPLEVE  180
PEESCASASK DEERRNPMNF IAPLSYRIPY ENNNNNNKAK GVAKGLFECK ACKKVFNSHQ  240
ALGGHRASHK KVKGCFAARL DQNPDDSIVE DDVITQDEFF PSKPNSTLQY DHGTSNNPTL  300
MASSSKRKSK VHECSICHRS FSSGQALGGH KRCHWITSNA PDTSTLARFQ QFQDQIEQIP  360
KFDNSSEPID LKLDLNLPAP TNTQIYLQPT WGANSSATKD NKIKEDNNNS QQNQNKNLVD  420
QNNETQEKNK NNNLKTLVQN VDNEDDSKVK LAKLSELKDV INIGGSSSPW LQVGIGTTTD  480
VRNDT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g028610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003605324.20.0zinc finger protein ZAT1
TrEMBLG7JJH50.0G7JJH5_MEDTR; Cys2/His2 zinc-finger transcription factor
STRINGAES875210.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF751188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.18e-23C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]