PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g028130.3 | ||||||||
Common Name | MTR_4g028130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 865aa MW: 96267.5 Da PI: 6.359 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.5 | 5.2e-18 | 315 | 414 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k l+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e+ Medtr4g028130.3 315 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEG 406 89**************************555567778***************9989999999***9.********************876.777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +l +++++ Medtr4g028130.3 407 KLIMGFRK 414 77777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-29 | 307 | 423 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-18 | 312 | 414 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.76E-22 | 313 | 414 | No hit | No description |
PROSITE profile | PS50863 | 11.166 | 315 | 416 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-19 | 315 | 415 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-15 | 315 | 414 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.361 | 543 | 593 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.5E-9 | 548 | 590 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 865 aa Download sequence Send to blast |
MESKCCMNVV CGTSTSIRWR KGWILRSGEF ADLCDKCGSA YEQSAFCDMF HAKESGWREC 60 TSCGKRLHCG CVASKSQLEI LDTGGVSCIT CASTSGLQPI ASNENPNESG TAKVNNVSAQ 120 QCITLANQLN VRGMQVGNYA ENDGMRCWLK PHNVDFDGLS REIKPEVLPS VGEFGSTLMS 180 QFHRESNGSS RTGKAENDMQ DIYESLAQTN LSMTLAAPLP NPFHNVLVDE REQSKMSPPL 240 LLASRSRHLL PKPPRPALSP GLEGNTGMVS QIRIARPPAE GRGRNQLLPR YWPRITDQEL 300 QQISGDSNST IVPLFEKMLS ASDAGRIGRL VLPKACAEAY FPPISQPEGL PLRIQDVKGK 360 EWMFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RMDPEGKLIM GFRKATNSAS 420 QSQKGCSETH LNALSKKWNS VGADMDWHNV EMPESRKRDV LSLPPVLVPE KKRTRNIGSK 480 SKRLLIDSED ALELKLTWEE AQDLLRPPPE VKPSVVMIED HLFEEYEEPP VFGKKSIFVV 540 RSTGISEQWT QCDSCQKWRK LPVDVLIPPK WTCMENFWDQ SRCSCAAPNE LNPMELDNLL 600 RMNNEFKKQR QAAASQRPAL DRESSGLDAL ANAAVLGDDA SDSGRTPVLT TTRHPRHRPG 660 CSCIVCIQPP SGKGKHKPTC TCNVCMTVKR RFKTLMMRKK KRQSEREAEI AQKNQQSWRT 720 KDESEVDSTS RHLTPVDGSE NEARVPNELD SRNEDQVADA AKGQLDLNCQ PDREDMQAGP 780 NTLSMMTLLE EANLPLETYL KQNGLSSLIS EQQTNSASNV QAHTTNESEG RQNEDCCTAS 840 AVHEQEDSPE ENSGQDRDQN NSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 5e-69 | 293 | 419 | 2 | 128 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 688 | 699 | KRRFKTLMMRKK |
2 | 688 | 701 | KRRFKTLMMRKKKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.24108 | 0.0 | root| seed| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g028130.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147537 | 0.0 | AC147537.39 Medicago truncatula clone mth2-133k2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013455146.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X4 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A072UJA5 | 0.0 | A0A072UJA5_MEDTR; AP2/B3 transcription factor family protein | ||||
STRING | AES87486 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g028130.3 |
Entrez Gene | 11424037 |
Publications ? help Back to Top | |||
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