PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g009110.1
Common NameMTR_4g009110
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 352aa    MW: 39337.5 Da    PI: 5.6176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g009110.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12172220255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +  h ++Er+RR+++ ++f  L   +P +      K++Ka+ L++A++Y+k+L+
  Medtr4g009110.1 172 CIDHIMAERKRRQELSEKFIALSATIPGL-----SKMDKASLLREAIDYVKQLK 220
                      56799***********************8.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.35E-12168224No hitNo description
PROSITE profilePS5088815.485170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9174219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-16174245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16175231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-14176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEESWENFHL DMELDCGDDY FIDDCNNLNI DGDDFIREIL LQTPEGLISS ESDHSFFHVQ  60
TDTVTVNVNG GVEVVGNTVK SKSSNSIVSQ QHQPQEQEQQ HGLKSKKVPR KSSSPKTYIL  120
SFDNSTMIPA TPEPCVNLSS RNKRSRESTQ KAEVKTNQQI NGVKKGRSSS QCIDHIMAER  180
KRRQELSEKF IALSATIPGL SKMDKASLLR EAIDYVKQLK EHVEELEKQD KNVGVTPVMV  240
LRQPYSCGIN EYTNSGETSC GDDCNHHILP DIEARVIGKE VLIEIHCEKQ NGIELKLLNH  300
IENLQLFVTG SSVLPFGKSA ISITIIARMG DECIVTMNDL VKSIRQVLLK P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.207210.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g009110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1384651e-141AC138465.40 Medicago truncatula clone mth2-23h19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003604300.20.0transcription factor bHLH18
TrEMBLG7JFN80.0G7JFN8_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES865221e-179(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131101230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-40bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]