PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g007770.1
Common NameMTR_4g007770
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 325aa    MW: 36775.3 Da    PI: 7.3407
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g007770.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.85.7e-133894155
              AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g
  Medtr4g007770.1 38 SVYRGVTRHRWTGRYEAHLWDkNCWNEsQSKKGRQGAYDDEEAAARAYDLAALKYWG 94
                     78*******************99998888888888********************98 PP
2AP251.42.6e-16137188155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Medtr4g007770.1 137 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 188
                      89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-1538104IPR016177DNA-binding domain
PfamPF008478.2E-93894IPR001471AP2/ERF domain
SMARTSM003801.7E-2039108IPR001471AP2/ERF domain
PROSITE profilePS5103218.6539102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1239103IPR001471AP2/ERF domain
PRINTSPR003673.4E-64051IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18137198IPR016177DNA-binding domain
CDDcd000183.95E-24137198No hitNo description
PfamPF008474.8E-12137188IPR001471AP2/ERF domain
SMARTSM003808.1E-25138202IPR001471AP2/ERF domain
PROSITE profilePS5103218.334138196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-18138197IPR001471AP2/ERF domain
PRINTSPR003673.4E-6178198IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAKKSQKNLK NTSTSSSSST TKRKRKSIPR NSPPQRSSVY RGVTRHRWTG RYEAHLWDKN  60
CWNESQSKKG RQGAYDDEEA AARAYDLAAL KYWGQDTILN FQVSNYQEEL KGMEGQSKEE  120
YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGRVFG NKYLYLGTYA TQEEAATAYD  180
MAAIEYRGLN AVTNFDLSHY ISYLHPKQQD NDDSNNHNKK ASNNQELDLN QELGGGVTPA  240
SSTFDLILES PKFEEMLENS SSSVEDSYTP PPVKSTIPRR TFPEDIQTIF ETQDSSIYTE  300
NDDDNIFGEL SSIAAPIFHY GLDA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g007770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638330.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-109AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A072UFX20.0A0A072UFX2_MEDTR; AP2-type transcription factor
STRINGXP_004507033.11e-179(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.18e-96ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]