PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g467380.1
Common NameMTR_3g467380
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 912aa    MW: 100519 Da    PI: 7.6783
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g467380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.7e-19339438198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kvl+ sd+++ grlvlpk +ae++   + + e+  l+++d +g++W++++++  +++s++yvl+ G     +a +L++gD+v+F++++  ++
  Medtr3g467380.1 339 FEKVLSASDAGRIGRLVLPKACAEAYfpHITHSEGLPLRVQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQAMDLRAGDTVTFSRID-PGG 430
                      99*************************9555667777***************9989999999***9.********************887.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  Medtr3g467380.1 431 KLVMGFRK 438
                      77777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-30335445IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-24337438No hitNo description
SuperFamilySSF1019363.92E-21337440IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-23339439IPR003340B3 DNA binding domain
PROSITE profilePS5086311.039339440IPR003340B3 DNA binding domain
PfamPF023621.6E-16339438IPR003340B3 DNA binding domain
PROSITE profilePS5105013.834603653IPR011124Zinc finger, CW-type
PfamPF074963.8E-10608650IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MGSDIGMVNG SCVHEWKKGW GLRSGGFAQL CFKCGFMEEW KSGNLDTLSP FESSVFCNKF  60
HRQQTGWREC NFCNKPIHSG CVVSKSLFEY LDFGGIGCVS CVNTSQLNMI RNTENPKWPV  120
SSTQNNARDI HSAHFDSGLF MSNVDEGKLM QLCRVVEASE SIHMSHAPIN NMITSNGKNN  180
PEVRPSFREG DTGFSNVIKP PVQSLTFATL ENNRPTWEIK NMHESNARPS LNMCLGNPSG  240
NNSFPPSGGE TTDGRLEGKV SPPFHQGPRS RPILPKLLKT GLTMNIETEK GTLSQPRIAR  300
PPGDGRGKNQ LLPRYWPRIT DQELERLSGD LKSTVVPLFE KVLSASDAGR IGRLVLPKAC  360
AEAYFPHITH SEGLPLRVQD VKGNEWTFQF RFWPNNNSRM YVLEGVTPCI QAMDLRAGDT  420
VTFSRIDPGG KLVMGFRKSS NSVDTQDAST SAHSNGGSAK GDTFSGGNEN LPSGSNCADL  480
LRSPNANGEL RLNGHPEPSH LVTGAAGLLK AENGEMTSNN SLDQKNSALE KKRTRNIGLK  540
SKRLLIGNDD SMELRLTWEE AQDLLRPPPS VKPSIVTIED QVFEEYDEPP VFGKRTIFSA  600
SSSGAKEQWA QCDDCSKWRK LPVDALLPPN WACLENVWDT SRSSCSAPDE LSSRELENLL  660
KSSKDFKKRR IVENSKLIQE HEPSGLDALA SLAVLGENLL GPADSSAGAT TKHPRHRPGC  720
SCIVCIQPPS GKGRHKPTCT CNVCTTVKRR FKTLMLRKKK RQSEREADAA AKKEHIHKRV  780
EESDTNGGAS REVANPLENE GGLNKGQVEV GESSAGKIDL NCHPNRDDLQ VDNIAKLSDH  840
IWEHINMNQN GGPRTVNTEM QEGQHSSLVT QSNGEDTRYL SEERCIASTV RNKERKDEVL  900
NHSNESEKNL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-663174462131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1747758KRRFKTLMLRKK
2747760KRRFKTLMLRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g467380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460465.10.0B3 domain-containing transcription repressor VAL1
TrEMBLA0A072UZF30.0A0A072UZF3_MEDTR; AP2/B3 transcription factor family protein
STRINGXP_004500368.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103233039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]