PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g467380.1 | ||||||||
Common Name | MTR_3g467380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 912aa MW: 100519 Da PI: 7.6783 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.3 | 1.7e-19 | 339 | 438 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+kvl+ sd+++ grlvlpk +ae++ + + e+ l+++d +g++W++++++ +++s++yvl+ G +a +L++gD+v+F++++ ++ Medtr3g467380.1 339 FEKVLSASDAGRIGRLVLPKACAEAYfpHITHSEGLPLRVQDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQAMDLRAGDTVTFSRID-PGG 430 99*************************9555667777***************9989999999***9.********************887.777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +lv+++++ Medtr3g467380.1 431 KLVMGFRK 438 77777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-30 | 335 | 445 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.68E-24 | 337 | 438 | No hit | No description |
SuperFamily | SSF101936 | 3.92E-21 | 337 | 440 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.0E-23 | 339 | 439 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.039 | 339 | 440 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-16 | 339 | 438 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.834 | 603 | 653 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.8E-10 | 608 | 650 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 912 aa Download sequence Send to blast |
MGSDIGMVNG SCVHEWKKGW GLRSGGFAQL CFKCGFMEEW KSGNLDTLSP FESSVFCNKF 60 HRQQTGWREC NFCNKPIHSG CVVSKSLFEY LDFGGIGCVS CVNTSQLNMI RNTENPKWPV 120 SSTQNNARDI HSAHFDSGLF MSNVDEGKLM QLCRVVEASE SIHMSHAPIN NMITSNGKNN 180 PEVRPSFREG DTGFSNVIKP PVQSLTFATL ENNRPTWEIK NMHESNARPS LNMCLGNPSG 240 NNSFPPSGGE TTDGRLEGKV SPPFHQGPRS RPILPKLLKT GLTMNIETEK GTLSQPRIAR 300 PPGDGRGKNQ LLPRYWPRIT DQELERLSGD LKSTVVPLFE KVLSASDAGR IGRLVLPKAC 360 AEAYFPHITH SEGLPLRVQD VKGNEWTFQF RFWPNNNSRM YVLEGVTPCI QAMDLRAGDT 420 VTFSRIDPGG KLVMGFRKSS NSVDTQDAST SAHSNGGSAK GDTFSGGNEN LPSGSNCADL 480 LRSPNANGEL RLNGHPEPSH LVTGAAGLLK AENGEMTSNN SLDQKNSALE KKRTRNIGLK 540 SKRLLIGNDD SMELRLTWEE AQDLLRPPPS VKPSIVTIED QVFEEYDEPP VFGKRTIFSA 600 SSSGAKEQWA QCDDCSKWRK LPVDALLPPN WACLENVWDT SRSSCSAPDE LSSRELENLL 660 KSSKDFKKRR IVENSKLIQE HEPSGLDALA SLAVLGENLL GPADSSAGAT TKHPRHRPGC 720 SCIVCIQPPS GKGRHKPTCT CNVCTTVKRR FKTLMLRKKK RQSEREADAA AKKEHIHKRV 780 EESDTNGGAS REVANPLENE GGLNKGQVEV GESSAGKIDL NCHPNRDDLQ VDNIAKLSDH 840 IWEHINMNQN GGPRTVNTEM QEGQHSSLVT QSNGEDTRYL SEERCIASTV RNKERKDEVL 900 NHSNESEKNL S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-66 | 317 | 446 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 747 | 758 | KRRFKTLMLRKK |
2 | 747 | 760 | KRRFKTLMLRKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g467380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013460465.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A072UZF3 | 0.0 | A0A072UZF3_MEDTR; AP2/B3 transcription factor family protein | ||||
STRING | XP_004500368.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10323 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g467380.1 |
Entrez Gene | 25491094 |
Publications ? help Back to Top | |||
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