PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g449770.1
Common NameMTR_3g449770
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 512aa    MW: 57085.9 Da    PI: 7.5655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g449770.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH551.5e-17319365455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L++l+P++      K +Ka++Le+A+eY+ksLq
  Medtr3g449770.1 319 VHNLSERRRRDRINEKMKALQQLIPHS-----SKTDKASMLEEAIEYLKSLQ 365
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-19312373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.47315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.34E-18318369No hitNo description
SuperFamilySSF474592.88E-20318393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-15319365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-18321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MNNTIPDWNF GIDSFVTNQK KQPMGLDHEL VELLWQNGQV VLNSQTNKKQ LVNNSRQVHK  60
NLQSTTLSNL IQDDETVSWI QQYPIEDPLE QELCSNLLSE LPPCNVESFN SQPTNTKPPF  120
VQEFPMSAPR FHHLVPDSSQ RNNDLCGSSK VVNFSHFSRH PNVTLASTNG DANLRDKITG  180
NLSQCDVREC STMTVGSSYC GSNQVQQDPD VSRVSSNGVW TNLSTEPEQV RNDVQKTIPR  240
HENGKSEKLE PAFTSSSGGS GSSLGKTCSL STRSHDKKRK VMDVEDSVEQ SEDTELKSGV  300
RKKTSQRSGS ARRNRAAEVH NLSERRRRDR INEKMKALQQ LIPHSSKTDK ASMLEEAIEY  360
LKSLQLQLQV MWMGSGMTPM MLPGYQHYMS QMGMGMTTPS FPPLQNPMQL PRMPLDLSVS  420
SSQTPNQTLT CQNPVLGAFN YQNQMQNPAL SEQYARYMGY HLMQNASQPM NMYRYGPQAV  480
QNSQTMIPPS NSSGPMSGTA NINDAVSGKM G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323328ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.92100.0leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g449770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459610.10.0transcription factor PIF4 isoform X1
TrEMBLA0A072UW390.0A0A072UW39_MEDTR; Transcription factor
STRINGXP_004499538.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-63phytochrome interacting factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]