PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g113070.1 | ||||||||
Common Name | MTR_3g113070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | DBB | ||||||||
Protein Properties | Length: 225aa MW: 25543.8 Da PI: 6.8529 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.5 | 5.7e-08 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ +++lfC+ ++ lC +C H+ H+ Medtr3g113070.1 4 QCDVCNKRQASLFCTADEAALCSTCDHRVHHAnklaskHR 43 7******99*******************964446777776 PP | |||||||
2 | zf-B_box | 17.3 | 9.7e-06 | 57 | 93 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38 + C+ + e + fC++++ +C++C l+ H g Ht Medtr3g113070.1 57 PLCDICLERRGFVFCQEDRAIVCKECDLKVH-GvneHT 93 579999999999******************9.666776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.106 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.15E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.6E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.6E-6 | 4 | 43 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.674 | 54 | 101 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.5E-11 | 54 | 101 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.69E-7 | 57 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MKIQCDVCNK RQASLFCTAD EAALCSTCDH RVHHANKLAS KHRRFSLDHP NSPNHFPLCD 60 ICLERRGFVF CQEDRAIVCK ECDLKVHGVN EHTKKHNRFL LSGIKLHSPA PPPTLHEETG 120 NFTISEYLIN TIPGWKFEDF LDSPSSSVPS HELQHQNHIV HDDANYHIHE ENILVSFSSE 180 SMRRICVPQA PLYYSEKMDN RSNTVNFSSS LGDFTVPQIT IPPN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g113070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003603724.1 | 1e-167 | B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 6e-54 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | G7J4N4 | 1e-166 | G7J4N4_MEDTR; Putative transcription factor interactor and regulator Znf-B family | ||||
STRING | AES73975 | 1e-167 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 2e-56 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g113070.1 |
Entrez Gene | 11437113 |