PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g111290.1
Common NameMTR_3g111290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 338aa    MW: 38588.4 Da    PI: 4.336
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g111290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-11175218654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr ++Pk +      K++  +iL  +++Y+k+L
  Medtr3g111290.1 175 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTAILGDTIDYMKEL 218
                      589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.926169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-14173231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-11175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9175218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-4176223No hitNo description
Gene3DG3DSA:4.10.280.106.1E-15176232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.54E-4263304No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEFYDGDFME ELMALRRETY EITNPSQEEN QFFSSTSNLS FDNCFEQNSL PYLPNSSCTQ  60
QVPQSYNNND HYSNTFNEIY GSLLDESSTP PQILDSYYNN SIDTPFISQE DFSLSMMGEE  120
DQGLLDDELQ NLELQTTCKM EPIQSPEMPV VFNTGNGMER KNRSKKLQGQ PSKNLMAERR  180
RRKRLNDRLS MLRAIVPKIS KMDRTAILGD TIDYMKELLE KIKNLQQEIE LDSNMTSIVK  240
DVKPNEILIR NSPKFEVERS ADTRVEICCA GKPGLLLSTV NTLEALGLEI QQCVISCFND  300
FTMQASCSEE LEKREMLSSE DIKQALFRSA GYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177184ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.87030.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g111290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1482360.0AC148236.14 Medicago truncatula clone mth2-124l5, complete sequence.
GenBankCU4682220.0CU468222.3 M.truncatula DNA sequence from clone MTH2-182C21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003603699.10.0transcription factor bHLH93
SwissprotQ9LSL13e-80BH093_ARATH; Transcription factor bHLH93
TrEMBLG7J4500.0G7J450_MEDTR; BHLH transcriptional factor
STRINGAES739500.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-82beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  5. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]