PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g110028.2 | ||||||||
Common Name | MTR_042s0013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 904aa MW: 100755 Da PI: 4.8553 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 33 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l Medtr3g110028.2 33 KGQWTPEEDNILRKAVERFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 79 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 66.1 | 6.2e-21 | 85 | 131 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +vd+v+++G++ W+tIa++++ gR +kqc++rw+++l Medtr3g110028.2 85 KGPWSKEEDETIVDLVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 131 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 51.4 | 2.5e-16 | 137 | 179 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ ++ ++ gRt++ +k++w+ Medtr3g110028.2 137 KEAWTQEEELALIHAHQIYGNR-WAELSKFLP-GRTDNAIKNHWN 179 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.477 | 28 | 79 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 32 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 33 | 79 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.0E-15 | 34 | 89 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 35 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.63E-14 | 36 | 79 | No hit | No description |
PROSITE profile | PS51294 | 32.512 | 80 | 135 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-32 | 82 | 178 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-19 | 84 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-19 | 85 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-16 | 87 | 131 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-28 | 93 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.586 | 136 | 186 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-16 | 136 | 184 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 137 | 180 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 139 | 186 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.79E-13 | 139 | 179 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 904 aa Download sequence Send to blast |
MGSESTIPAL SDGVQKIRAL HGRTTGPTRR STKGQWTPEE DNILRKAVER FQGKNWKKIA 60 ECFKDRTDVQ CLHRWQKVLN PELIKGPWSK EEDETIVDLV NKYGPKKWST IAQHLPGRIG 120 KQCRERWHNH LNPSINKEAW TQEEELALIH AHQIYGNRWA ELSKFLPGRT DNAIKNHWNS 180 SVKKKLDSYL ASGLLAQFQN VPLVGNPNQP IASSSARLQF SVDDNGPRGT EGEEVSQCSQ 240 ESINASHFPS GRELSIAVIQ NVEEYRQNEE SNQASCSEPY YMSLDGVTLQ EVCSSQFLEQ 300 KYSNEPGSSS ANVDCQFNLH ALPTSLDFGQ ESTQLQNDSL ASGENMMIVP YEYRPSSMGN 360 AKGEQNMLIT DDECCRFLFS EAMSDECFSS GGVNNVDLSG YTSSLCHSSL PSDSRMIMST 420 AEANQLVGSV DQQFDSREDV VKDDSLKLEP VSNSGCGSDT MQTCYPIDEK PNVHTQQEET 480 GGTLCYEPPR FPSLDIPFLS CDLIQSGDMQ QEFSPLGIRQ FMMSSMNCLT PFRLWDSPSR 540 IDSPDALLKS AAKTFTSTPS IMKKKKRNRE RDLLSPLSDR RMEKKHEIDM TSTLIRNFSR 600 LDVMFDDNET QGIEHDKENR GPAFMVEDKS NSEEKIEQPP LDADSKMKND IDTTAEIVQQ 660 PSRVLIEHDM NDPSLYSPNQ VGLKSDIVLS LSARSHQKSV SRFSSPCVRL KEHERLSVSV 720 TCVQSICSSS IPGENMDDQT GNDDGFETNN IFGGMPFRKS FESPSAWKSP LFINTFLSSP 780 RIDAEITIED YGCFFSPGDK SSYDALGWIK QIGEHTAAQY ANALEALENE TPKALPNDAS 840 GDDQENNDPH NQSGNHSKSP SNASVERRML DFSECGTPNK GDKGKSSAMS VSSPSSYLLK 900 GCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 8e-70 | 33 | 186 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-70 | 33 | 186 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the columella root cap. Also present in floral organs in young flower buds. Strongly expressed in vascular tissues of filaments and anthers. Weakly and uniformly present in the developing embryo and maternal tissues (PubMed:17287251). Expressed both in proliferating and maturing stages of leaves (PubMed:26069325). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:26069325}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously at low levels (PubMed:10743663). Expressed in roots, cotyledons, flowers and leaves, especially in vascular tissues (PubMed:17287251). {ECO:0000269|PubMed:10743663, ECO:0000269|PubMed:17287251}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g110028.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013461972.1 | 0.0 | transcription factor MYB3R-1 | ||||
Refseq | XP_024635648.1 | 0.0 | transcription factor MYB3R-1 | ||||
Swissprot | Q9S7G7 | 1e-131 | MB3R1_ARATH; Transcription factor MYB3R-1 | ||||
TrEMBL | A0A072V2D4 | 0.0 | A0A072V2D4_MEDTR; Putative transcription factor MYB-HB-like family | ||||
STRING | AES83607 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 1e-132 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g110028.2 |
Publications ? help Back to Top | |||
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